View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_18 (Length: 423)
Name: NF20437_low_18
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 2615449 - 2615851
Alignment:
| Q |
8 |
attatacttggtcacttattttatctttatattcagtaaacatgtaattaagtaaatatgttataatatctttcgatttcttttacctaatgacttaata |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2615449 |
attatacttagtcacttattttatctttatattcagtaaacatgtaattaagtaaatatgttctaatatctttcgatttcttttacctaatgacttaata |
2615548 |
T |
|
| Q |
108 |
atatgatgttagaagagttggtaatgtggctctcgtggagaaagaattcatgtttgattccaagagctggtcatttgaggaacaatccaatttcatgtgt |
207 |
Q |
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| T |
2615549 |
atatgatgttagaagagttggtaatgtggctctcgtggagaaagaattcatgtttgattccaagagctggtcatttgaggaacaatccaatttcatgtgt |
2615648 |
T |
|
| Q |
208 |
aaaaaattgtatgtgtaaactcatata--tttttaaacagtgaacattctatagttaaaggagaaaattatagagcacttaacccacaagctgnnnnnnn |
305 |
Q |
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| T |
2615649 |
aaaaaattgtatgtgtaaactcatatatttttttaaacagtgaaaattctattgttaaaggagaaaattatagagcacttaatccacaagctgaaaaaaa |
2615748 |
T |
|
| Q |
306 |
gtataaaggatactcgaccaccagaaatacccccaactaaatcacgacaaatacaaatcaaaggatttaaaaatcattcatagtacatataagactccat |
405 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2615749 |
gtataaaggatactcgaccaccaaaaatacccccaactaaatcatgacaaatacaaatcaaaggatttaaaaatcattcatagtacatataagactccat |
2615848 |
T |
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| Q |
406 |
tgt |
408 |
Q |
| |
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||| |
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| T |
2615849 |
tgt |
2615851 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 38366468 - 38366416
Alignment:
| Q |
340 |
aactaaatcacgacaaa-tacaaatcaaaggatttaaaaatcattcatagtac |
391 |
Q |
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||||||||| ||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
38366468 |
aactaaatcgcgacaaaatacaaatcaaagagtttgaaaatcattcatagtac |
38366416 |
T |
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