View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_20 (Length: 412)
Name: NF20437_low_20
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 175 - 404
Target Start/End: Complemental strand, 34745829 - 34745600
Alignment:
| Q |
175 |
agtttttgtttttgacccctcgatgatccactaatgaacagagaaaaagggtataagcatgaatgtacttctaacacatgtgcatctagaaagnnnnnnn |
274 |
Q |
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| T |
34745829 |
agtttttgtttttgacccctcgatgatccactaatgaacagagaaaaagggtataagcatgaatgtacttctaacacatgtgcatctagaaagaaaaaaa |
34745730 |
T |
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| Q |
275 |
caatggcatctagcaactagcatgcaatgtaagttttgataattcaaatttacaaacaaacatatgagagaggttcgatttttcgttagtacatccatat |
374 |
Q |
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| T |
34745729 |
caatggcatctagcaactagcatgcaatgtaagttttgataattcaaatttacaaacaaacatatgagagaggttcgatttttcgttagtacatccatat |
34745630 |
T |
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| Q |
375 |
gagaaatgatgagatgtgttggagaattat |
404 |
Q |
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| T |
34745629 |
gagaaatgatgagatgtgttggagaattat |
34745600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 34746099 - 34745924
Alignment:
| Q |
5 |
catatacataatacgtaagtttttaagtggagatatagtgtctttctctcttataattttgaagtattgactcacttgcattaaaattttcaaggttgtt |
104 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34746099 |
catatacataatatgtaagtttttaagcggagatatagtgtctttctctcttataattttgaagtattgactcacttgcattaaaattttcaaggttgtt |
34746000 |
T |
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| Q |
105 |
cgaggtttaattttttgacaaaagtatttttggattaagcggagtataaatgaaatcttactatcacttgagtttt |
180 |
Q |
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| T |
34745999 |
cgaggtttaattttttgacaaaggtatttttggattaagcggagtataaatgaaatcttactaccacttgagtttt |
34745924 |
T |
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