View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20437_low_22 (Length: 383)
Name: NF20437_low_22
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 33657717 - 33658068
Alignment:
| Q |
18 |
tattatatatcatttcgggcaagtttaatttattgtatgtactactactaattaacttaattataattgtataaatcatcatgatcaggtatggagagat |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33657717 |
tattatatatcatttcgggtaagtttaatttattgtatgtactactactaattaacttaattataattgtataaatcatcatgatcaggtatggagagat |
33657816 |
T |
|
| Q |
118 |
ttttaaaacacgcatactaggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctcatttgtttaagcctaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33657817 |
ttttaaaacacgcatactaggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctcatttgtttaagcctaca |
33657916 |
T |
|
| Q |
218 |
taccccaaaagcaaagagaaacttattggttcttctgcattattctttcaccaaggagattaccacactcgcattaggaaacttgttcaaacctcacttt |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33657917 |
taccccaaaagcaaagagaagcttattggttcttctgcattgttctttcaccaaggagattaccacacacgcattaggaaacttgttcaaacctcacttt |
33658016 |
T |
|
| Q |
318 |
ctcctgaatcaatcaagaaattgatcccttatatagaaacccaagttatttc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33658017 |
ctcctgaatcaatcaagaaattgatcccttatatagaaacccaagttatttc |
33658068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 101 - 356
Target Start/End: Original strand, 33698335 - 33698590
Alignment:
| Q |
101 |
atcaggtatggagagatttttaaaacacgcatactaggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctc |
200 |
Q |
| |
|
||||| |||||||| || ||||| |||| |||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698335 |
atcagatatggagaaatatttaagacacacatattaggatgtccatgtgtgatgttaacaagtcctgaggctgcaagatttgtgttggtgactcattctc |
33698434 |
T |
|
| Q |
201 |
atttgtttaagcctacataccccaaaagcaaagagaaacttattggttcttctgcattattctttcaccaaggagattaccacactcgcattaggaaact |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
33698435 |
atttgtttaagcctacataccccaaaagcaaagagaaacttattggttcttctgcattattctttcaccaaggagattaccacactcgcatcagaaaact |
33698534 |
T |
|
| Q |
301 |
tgttcaaacctcactttctcctgaatcaatcaagaaattgatcccttatatagaaa |
356 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
33698535 |
cgttcaaaactctcttgctcctgaatcaatcaagaaattgatccctgatattgaaa |
33698590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 5859496 - 5859593
Alignment:
| Q |
137 |
ggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctcatttgtttaagcctacataccccaaaagcaaaga |
234 |
Q |
| |
|
|||||| | ||||||||| | ||||||||||| |||||| | |||||||||||||| || ||||| || ||||| || ||||| || ||||||||||| |
|
|
| T |
5859496 |
ggatgtaagtgtgtgatgttggcaagtcctgaagctgcacgttttgtgttggtgacacaatctcacttatttaaaccaacatatcctaaaagcaaaga |
5859593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University