View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20437_low_23 (Length: 380)
Name: NF20437_low_23
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 2 - 362
Target Start/End: Complemental strand, 10344488 - 10344127
Alignment:
| Q |
2 |
aaatcctcgttttcagaacattttttgttttatataacttctcaaaatactttcaaacttaactagctagttcaaatattttcaaatgctttgacgatag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10344488 |
aaatcctcgttttcagaacattttttgttttgtaaaacttctcaaaatactttcaaacttaactagctagttcaaatattttcaaatgctttgacgatag |
10344389 |
T |
|
| Q |
102 |
ag--taaaataggacnnnnnnncaaactatttttaaagatatttccgtcaaaccgtatcaaagaaaatgcattgggtaatatctatgagataatcagaaa |
199 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
10344388 |
agagtaaaataggactttttttcaaactatttttaaagatatttccgtcaaaccgtatcaaagaaaatgcattgggtaatatctttgagataatcaaaaa |
10344289 |
T |
|
| Q |
200 |
ctatatcaagtgataacaagcaacattacaacacatcagcttcccaccttttctttcaaacttttcttaactgatcaatgcaatcacgtaacttactaga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10344288 |
ctatatcaagtgataacaagcaacattacaacacatcagcttcccaccttttctttcaaactcttcttaactgatcaatgcaatcacgtaacttactaga |
10344189 |
T |
|
| Q |
300 |
actgctactactaaaaataaaagtaagattaattgccagtttcacactaattaggatataaac |
362 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10344188 |
actgctaatactaaaaatgaaagtaagattaattgcc-gtttcacactaattaggatataaac |
10344127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 10346413 - 10346368
Alignment:
| Q |
22 |
ttttttgttttatataacttctcaaaatactttcaaacttaactag |
67 |
Q |
| |
|
||||||||||| || |||||||||| | |||||||||||||||||| |
|
|
| T |
10346413 |
ttttttgttttgtaaaacttctcaatacactttcaaacttaactag |
10346368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University