View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20437_low_26 (Length: 367)
Name: NF20437_low_26
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42755997 - 42755762
Alignment:
| Q |
1 |
aattccagatcgatccattctctacaataaataaaaattaactatactcagtaagaaatatccatatacataataat-ccaaaccaaattatgcaatagt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42755997 |
aattccagatcgatccattctctacaataaataaaaattaacaatactcagtaagaaatatccatatacataataattccaaaccaaattatgcaatagt |
42755898 |
T |
|
| Q |
100 |
acataattaaatctcaacattattgcttgtaagtgaaggcaaaatcccagactgacacatgatctagactcagaatattcctcattttattatttaataa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42755897 |
gcataattaaatctcaacattattgcttgtaagtgaaggcaaaattccagactgacacatgatctggactcagaatattcctcattttattatttaataa |
42755798 |
T |
|
| Q |
200 |
taaattaattcacaatacaataggtccacaatgaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42755797 |
taaattaattcacaatacaataggtccacaatgaca |
42755762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 42755692 - 42755614
Alignment:
| Q |
274 |
cctctgatggaggactatgtgaaggatcagacaaatgaggaggcaaagaaccagaacgaatagacctagcagttgaaac |
352 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42755692 |
cctctgatggagggctatgtgaaggatcagacaaatgaggaggcaaagaaccagaacgaatagacctagcagttgaaac |
42755614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University