View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20437_low_27 (Length: 367)

Name: NF20437_low_27
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20437_low_27
NF20437_low_27
[»] chr6 (1 HSPs)
chr6 (67-359)||(17173766-17174062)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 67 - 359
Target Start/End: Original strand, 17173766 - 17174062
Alignment:
Q  67 aatggttgtatacttattcaattaaatatgaagatggttggttatgaaataaaccttgtttttctcgacagagaaataaactaat----agtgtgaccct 162  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||||| | ||||||||| |||||||||    |||||||||||    
T  17173766 aatggttgtgtacttattcaattaattatgaagaaggttggttatgaaataaaccttctttttttggacagagaattaaactaatctttagtgtgaccct 17173865  T
Q  163 tgcaccatgcataaggtcagataaaaatatgcaaagaatcttctcaagtcccactaacttttatattcttcccatagtcaaataaactttttaaacatat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17173866 tgcaccatgcataaggtcagataaaaatatgcaaagaatcttctcaagtcccactaacttttatattcttcccatagtcaaataaactttttaaacatat 17173965  T
Q  263 aaataaaagaaacaagtaccttttacaagaccaattcttttcaaattttcaaagcgtttctctccttccattgattttcaatcggaagattcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17173966 aaataaaagaaacaagtaccttttacaagaccaattcttttcaaattttcaaagcgtttctctccttccattgattttcaatcggaagattcttctc 17174062  T

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