View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20437_low_29 (Length: 353)
Name: NF20437_low_29
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_29 |
 | |
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| [»] scaffold1485 (1 HSPs) |
| | |
|
| [»] scaffold0285 (1 HSPs) |
| | |
|
| [»] scaffold0334 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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| [»] scaffold0231 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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| [»] scaffold1121 (1 HSPs) |
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| [»] scaffold0520 (1 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0134 (1 HSPs) |
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| [»] scaffold0183 (1 HSPs) |
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| [»] scaffold0160 (1 HSPs) |
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| [»] scaffold0043 (2 HSPs) |
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| [»] scaffold0577 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0535 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold1485 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold1485
Description:
Target: scaffold1485; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 339 - 493
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
339 |
caaatatatgtgcaatgagacttaatcttagaattgagagattcacgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
438 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
439 |
acaatagacaatttcaaaccaaacctacatgaacaaaattactaagttatcaaat |
493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 4854648 - 4854494
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4854648 |
caaatatatgtgcaatgagacttaatcttagaattgagagattcacgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
4854549 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4854548 |
acaatagacaatttcaaaccaaacctacatgaacaaaattactaagttatcaaat |
4854494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 4872643 - 4872487
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtaca |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4872643 |
gacaaatatatgtgcaatgagatttaatcttagaattgagagattcacgatacaaatcttattatacaatcaaactttaatattctttgaacaatgtaca |
4872544 |
T |
|
| Q |
117 |
aaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4872543 |
aaacaatagacaatttcaaaccaaacctatctgaacaaaattactaagttatcaaat |
4872487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 4876383 - 4876227
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876383 |
caaatatatgtgcaatgagacttaatcttagaattgagagattcacgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
4876284 |
T |
|
| Q |
119 |
acaatagacaatttcaaacc--aaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4876283 |
acaatagacaatttcaaaccaaaaacctacatgaacaaaattactaagttatcaaat |
4876227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 14636248 - 14636411
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaa-------atcttattatacaatcaaactttaatattccttgaaca |
109 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
14636248 |
gacaaatatatgtgaaataagatttaatcttagaattgagagattcaagattcaagattaaaatcttattatataatcaaatgttaatattccttgaaca |
14636347 |
T |
|
| Q |
110 |
atgtacaaaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14636348 |
atgtacaaaacaatatacaatttcaaaccaaacctatatgaacaaaattactaagctatcaaat |
14636411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 4848266 - 4848163
Alignment:
| Q |
70 |
aaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatc |
169 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4848266 |
aaatgttattatacaatcaaactttaatattccttgaacaatgtataaaacaatagacaatttcaaaccaaatctatatgaacaaaattactaagttatc |
4848167 |
T |
|
| Q |
170 |
aaat |
173 |
Q |
| |
|
|||| |
|
|
| T |
4848166 |
aaat |
4848163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 338
Target Start/End: Complemental strand, 4857926 - 4857749
Alignment:
| Q |
168 |
tcaaattatataatccaaaccaggaacaacttgtttcagattat---ataacctaaaatgttttagtttacagagnnnnnnnnn----gattcaaataac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||| ||| || ||||||||||||||| |||||||||||| |
|
|
| T |
4857926 |
tcaaattatataatccaaaccaggaacaacttgattcagattattatataatctataaggttttagtttacagaagaaaaaaaaaaaagattcaaataac |
4857827 |
T |
|
| Q |
261 |
actaaagggaaggaatgataccctaccttgttgtctgtgtttgaaaagacccgatcaatgttttgaaacaaaaaatct |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4857826 |
actaaagggaaggaatgataccctaccttgttgtccgtgtttgaaaagacctgatcaatgttttgaagcaaaaaatct |
4857749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 19455676 - 19455833
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtaca |
116 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||| ||||| ||| |||| || |||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
19455676 |
gacaaatatacatgcaataagatttaatcttagaattaagagattcacaatactaaccttattatacaatcaaacttcaataaaccttgaacaatgtaca |
19455775 |
T |
|
| Q |
117 |
aaac-aatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
19455776 |
aaacgtttagacaatttcaaaccaaacctatatgaacaaaattactaagctgtcaaat |
19455833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 23296271 - 23296114
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtaca |
116 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||| |||||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
23296271 |
gacaaatatatgtgcaatatgatttaat-ttagaatcgagagattcatgatacaaatcttattaagcaatcaaaccttaattaaccttgaacaatgtaca |
23296173 |
T |
|
| Q |
117 |
aaac-aatagacaatttcaaaccaaacctatatgaac-aaaattactaagttatcaaat |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
23296172 |
aaacttatagacaatttcaaaccaaacctatatgaacaaaaattactaaactatcaaat |
23296114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 8943435 - 8943329
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaa-accaaaccta |
145 |
Q |
| |
|
|||||||||| || ||| |||||||||||||| |||||||||||||||| | ||||||||||| |||||||| ||||||||||||| | |||||||| |
|
|
| T |
8943435 |
tagaattgagtgattcacaatacaaatcttatt-tacaatcaaactttaacgtgccttgaacaatttacaaaac-ttagacaatttcaatatcaaaccta |
8943338 |
T |
|
| Q |
146 |
tatgaacaa |
154 |
Q |
| |
|
||||||||| |
|
|
| T |
8943337 |
tatgaacaa |
8943329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 14760599 - 14760731
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttat-tatacaatcaaactttaatattccttgaacaatgtacaa |
117 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| ||||||||| || | || |||||||| |||| | ||||| ||||| ||||| |
|
|
| T |
14760599 |
caaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatattttgtacacaatcaattattaacaatccttaaacaagatacaa |
14760698 |
T |
|
| Q |
118 |
aacaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |
|
|
| T |
14760699 |
aacaattcacaatttcaaaccaaacctgtatga |
14760731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 13081273 - 13081202
Alignment:
| Q |
18 |
acaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaa |
89 |
Q |
| |
|
||||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| | | |||||||| |
|
|
| T |
13081273 |
acaaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatcttttgacacaatcaa |
13081202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 4733897 - 4733802
Alignment:
| Q |
55 |
agagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
||||| ||| |||||||||||| | |||||||| |||| | ||||| ||||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4733897 |
agagattcacgatacaaatcttttgtcacaatcaattattaacaatccttaaacaagatacaaaacaatatacaatttcaaaccaaatctatatga |
4733802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 17884 - 18046
Alignment:
| Q |
11 |
caaagggacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaa |
110 |
Q |
| |
|
|||| ||||||||||||||| ||| ||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17884 |
caaaaggacaaatatatgtgaaataagattcaatcttagaattgagagattcacgattcaaatcttattatacaatcaaatgttaatattccttgaacaa |
17983 |
T |
|
| Q |
111 |
tgtacaaaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17984 |
tgtacaaaacaatatacaatttcaaaccaaacctatatgaacaaaattactaagctatcaaat |
18046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 17495230 - 17495375
Alignment:
| Q |
29 |
tgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaac-aatagac |
127 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
17495230 |
tgcaataagatttaatcttagaattgagagattcacgatacaaatcttattatacaatcaaactttaataatccttgaacaatgtacaaaacttatagac |
17495329 |
T |
|
| Q |
128 |
aatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||| |||||||| |
|
|
| T |
17495330 |
aatttcaaacctaacctatatgaagataattactaagctatcaaat |
17495375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 19817962 - 19818118
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtaca |
116 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||| |||||||||| ||||| |
|
|
| T |
19817962 |
gacaaatatatttgcaataagatttaatcttagaattgagagattcacgatacaaatcttattatacaatcaaatgtgaatagaccttgaacaaagtaca |
19818061 |
T |
|
| Q |
117 |
aaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
19818062 |
aaacaatacacaatttcaaaccaaacctatataaacaaaattactaagctgtcaaat |
19818118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 23478733 - 23478580
Alignment:
| Q |
20 |
aaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaa |
119 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
23478733 |
aaatatatgtgcaatcagatttaatcttagaattgagagattcacgatacaaatcttattaca-aatcaaactttaattaaccttgaacaatgtacaaaa |
23478635 |
T |
|
| Q |
120 |
caat-agacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23478634 |
cttttagacaatttcaaaccaaacctatatgaacaaaattactaagctatcaaat |
23478580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 22852191 - 22852336
Alignment:
| Q |
26 |
atgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaac-aata |
124 |
Q |
| |
|
||||||||| ||| |||||||| ||||||| ||| ||| |||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||| |
|
|
| T |
22852191 |
atgtgcaataagatttaatctttgaattgatagattcacaatacaaatcttattatacaatcaaacttaaataatccttgaacaa-atacaaaacttata |
22852289 |
T |
|
| Q |
125 |
gacaatttcaaaccaaacctatatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
22852290 |
gacaatttcaaatcaaacctatatgaacaaaattactaagctatcaa |
22852336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 21018049 - 21017919
Alignment:
| Q |
43 |
atcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaac |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||| | |||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
21018049 |
atcttagaattgagagattcatgatacaaatctttttatacaatcaaatatcaataaaccttgaacaaggtacaaaacaatacccaatttcaaaccaaac |
21017950 |
T |
|
| Q |
143 |
ctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||| ||| ||||||||||||| |||||||| |
|
|
| T |
21017949 |
ctaagtgagcaaaattactaagctatcaaat |
21017919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 21218443 - 21218312
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
21218443 |
caaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatctttttacccaatcaattgttaataatccttgaacaaggtacaaa |
21218344 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
21218343 |
acaatacacaatttcaaaccaaacctatatga |
21218312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 17444497 - 17444366
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||| ||||||| ||| ||| || ||||||||||||||||| ||| |||||| ||||| ||| |||||||| |||||| ||||||||||| |||||| |
|
|
| T |
17444497 |
caaaaatatgtggaataagattttatcttagaattgagagattcacgatacatatctttttacacaatcaatagttaataatccttgaacaagatacaaa |
17444398 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
17444397 |
acaatacacaatttcaaaccaaacctatatga |
17444366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 16970105 - 16969996
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaat-agacaatttcaaaccaaaccta |
145 |
Q |
| |
|
||||||||||| | || ||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
16970105 |
tagaattgagaaattcgtgatacaaatcttat-acacaatcaaactttaataaaccttgaacaatttacaaaaattttagacaatttcaaaccaaaccta |
16970007 |
T |
|
| Q |
146 |
tatgaacaaaa |
156 |
Q |
| |
|
|||||||||| |
|
|
| T |
16970006 |
catgaacaaaa |
16969996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 22106032 - 22106164
Alignment:
| Q |
19 |
caaatatatgtgcaa-tgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaa |
117 |
Q |
| |
|
|||||||||||| || | ||| || ||||||||||||||||| ||| |||||||||||| | | |||||||| |||| | | ||| ||||| ||||| |
|
|
| T |
22106032 |
caaatatatgtggaaataagattttatcttagaattgagagattcacgatacaaatcttttgacacaatcaattattaacaatgcttaaacaagatacaa |
22106131 |
T |
|
| Q |
118 |
aacaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
||||| | ||||||||||||||||||||||||| |
|
|
| T |
22106132 |
aacaacatacaatttcaaaccaaacctatatga |
22106164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 19956970 - 19957040
Alignment:
| Q |
81 |
tacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaacctatatgaa |
151 |
Q |
| |
|
||||||||||||||||| | ||||||||||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
19956970 |
tacaatcaaactttaatgtgccttgaacaatttgcaaaac-tttgacaatttctaaaccaaacctatatgaa |
19957040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 23191016 - 23190979
Alignment:
| Q |
113 |
tacaaaacaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
23191016 |
tacaaaataatatacaatttcaaaccaaacctatatga |
23190979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 22441339 - 22441495
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtaca |
116 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||| |||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
22441339 |
gacaaatatatgtgaaataagatttaatcttataattgagagattcacgattcaaatcttattatacaatcaaatgttaatattccttgaacaaagtaca |
22441438 |
T |
|
| Q |
117 |
aaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
22441439 |
aaacaatatacaatttcaaaacaaatctataggaacaaaattactaagctatcaaat |
22441495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 19126817 - 19126903
Alignment:
| Q |
87 |
caaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19126817 |
caaactttaataatccttgaacaatgtacaaaacaatagacaatttcaaaccaaacccatatgaacaaaattactaagctatcaaat |
19126903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 29674737 - 29674864
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||| ||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||| ||||||||||| |||||| |
|
|
| T |
29674737 |
caaaaatatgtggaataagattttatcttagaattgagagattcacgatacaaatctttttacacaatcaatagttaataatccttgaacaagatacaaa |
29674836 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctat |
146 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
29674837 |
acaatacccaatttcaaaccaaacctat |
29674864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 24246124 - 24245996
Alignment:
| Q |
25 |
tatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaaca-at |
123 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||| || |
|
|
| T |
24246124 |
tatgtgaaataagatttaatcttagaattgatag--tcatgatacaaatcttat-atacaatcaaactttaatcaacctagaacaatatacaaaacttat |
24246028 |
T |
|
| Q |
124 |
agacaatttcaaaccaaacctatatgaacaaaa |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
24246027 |
agacaatt-caaaccaaacctatatgaacaaaa |
24245996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 19765441 - 19765298
Alignment:
| Q |
25 |
tatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttat-ta-tacaatcaaactttaatattccttgaacaatgtacaaaacaa |
122 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||| ||| ||||||||| |||| || |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19765441 |
tatgtgcaataagatttaatct-agaattgagagattcacgatacaaatattatatactacaatcaaactttaataa-ccttgaacaatgtacaaaactt |
19765344 |
T |
|
| Q |
123 |
t-agacaatttcaaaccaaacctatatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
19765343 |
ttagacaatttcaaa----acctatatgaacaaaattagtaagttatcaa |
19765298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 16739100 - 16739207
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaa-accaaaccta |
145 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||| |||||||||||||||| | |||||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
16739100 |
tagaattgagtgattcacaatacaaatcttatta-acaatcaaactttaatgtgccttgaacaacttacaaaactttagacaatttcaataccaaaccta |
16739198 |
T |
|
| Q |
146 |
tatgaacaa |
154 |
Q |
| |
|
||||||||| |
|
|
| T |
16739199 |
tatgaacaa |
16739207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 24740617 - 24740515
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaaccta |
145 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||||||||| | |||| || ||| | |||||| ||||||| ||| |||||||||||| |
|
|
| T |
24740617 |
tagaattgagagattcacaatacaaatcttat--tacaatcaaactttaatgtgccttaaaaaatttgcaaaac-ttagacaaattcaaaaccaaaccta |
24740521 |
T |
|
| Q |
146 |
tatgaa |
151 |
Q |
| |
|
|||||| |
|
|
| T |
24740520 |
tatgaa |
24740515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 23374862 - 23374963
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaacctat |
146 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||| |||||||| |||| | | ||||||||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
23374862 |
tagaattgagtgattcacaatacaaatcttatta--caatcaaaatttattgtaacttgaacaacttgcaaaacc-tagacaatttcaaaccaaacctat |
23374958 |
T |
|
| Q |
147 |
atgaa |
151 |
Q |
| |
|
||||| |
|
|
| T |
23374959 |
atgaa |
23374963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 24670848 - 24670746
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaaccta |
145 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||||||||| | |||| || ||| | |||| | ||||||| ||| |||||||||||| |
|
|
| T |
24670848 |
tagaattgagagattcacaatacaaatcttat--tacaatcaaactttaatgtgccttaaaaaatttgcaaagc-ttagacaaattcaaaaccaaaccta |
24670752 |
T |
|
| Q |
146 |
tatgaa |
151 |
Q |
| |
|
|||||| |
|
|
| T |
24670751 |
tatgaa |
24670746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 24707623 - 24707521
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaaccta |
145 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||||||||| | |||| || ||| | |||| | ||||||| ||| |||||||||||| |
|
|
| T |
24707623 |
tagaattgagagattcacaatacaaatcttat--tacaatcaaactttaatgtgccttaaaaaatttgcaaagc-ttagacaaattcaaaaccaaaccta |
24707527 |
T |
|
| Q |
146 |
tatgaa |
151 |
Q |
| |
|
|||||| |
|
|
| T |
24707526 |
tatgaa |
24707521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 24753386 - 24753284
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaaccta |
145 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||||||||| | |||| || ||| | |||| | ||||||| ||| |||||||||||| |
|
|
| T |
24753386 |
tagaattgagagattcacaatacaaatcttat--tacaatcaaactttaatgtgccttaaaaaatttgcaaagc-ttagacaaattcaaaaccaaaccta |
24753290 |
T |
|
| Q |
146 |
tatgaa |
151 |
Q |
| |
|
|||||| |
|
|
| T |
24753289 |
tatgaa |
24753284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 24130028 - 24129940
Alignment:
| Q |
83 |
caatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaa-accaaacctatatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
||||||||||||||| | | |||||||| |||||||| ||||||||||||| ||||||||||| ||||||| | ||| ||| |||||| |
|
|
| T |
24130028 |
caatcaaactttaatgtgtcatgaacaatttacaaaac-ttagacaatttcaataccaaacctatttgaacaataataccaagctatcaa |
24129940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 6753 - 6904
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtaca |
116 |
Q |
| |
|
|||||||||||||| ||| ||| | |||||||||||| ||||| ||| ||| |||||||||||||||||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
6753 |
gacaaatatatgtgaaataagattcaatcttagaattaagagattcacgattcaaatcttattatacaattaaatgttaatattccttaaacaaagtaca |
6852 |
T |
|
| Q |
117 |
aaacaatagacaatttcaaaccaaacctatatgaacaaaattactaagttat |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6853 |
aaacaatagacaatttcaaaccaaacctatatgaacaaaattactaaattat |
6904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 12476311 - 12476177
Alignment:
| Q |
40 |
ttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaa-caatagacaatttcaaacc |
138 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
12476311 |
ttaatcttagaattgagagattcacgatacaaatattattatacaatcaaactttaataatccttgaacaatatacaaaatttatagacaatttcaaacc |
12476212 |
T |
|
| Q |
139 |
aaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |
|
|
| T |
12476211 |
aaacttatatgaacaaaattactaagctatcaaat |
12476177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 24001980 - 24001826
Alignment:
| Q |
20 |
aaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaa |
119 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||| |||||| ||||||||||| |
|
|
| T |
24001980 |
aaatatatgtgcaataagatttaatcttagaattgagagattcacgatacaaatcttattatatactcaaactttaattaaccttgagcaatgtacaaag |
24001881 |
T |
|
| Q |
120 |
c-aatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24001880 |
cttttagacaatttcaaaccaaacctatatgaacaaaattactaagctatcaaat |
24001826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 15935878 - 15935743
Alignment:
| Q |
40 |
ttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaacca |
139 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
15935878 |
ttaatcttagaattgagagattcaggattcaaatcttattatacaatcaaatgttaatattccttgaacaaagtacaaaaaaatatacaatttcaaacca |
15935779 |
T |
|
| Q |
140 |
aacctatatgaacaaaattactaagttatcaaatta |
175 |
Q |
| |
|
| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
15935778 |
accctataaaaacaaaattactaagctatcaaatta |
15935743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 17582628 - 17582752
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaat-agacaatttcaaaccaaaccta |
145 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||| || |||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||||||| |
|
|
| T |
17582628 |
tagaattaagagattcacgatacaaatcttat-attcaatcaaactttaataaaccttgaacaatgtaaaaaacttttagaaaatttcaaaccaaaccta |
17582726 |
T |
|
| Q |
146 |
tatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
17582727 |
tatgaacaaaattactaagctatcaa |
17582752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 22850318 - 22850444
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaa-aacaatagacaatttcaaaccaaa-cct |
144 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||||| ||| |
|
|
| T |
22850318 |
tagaattgagagattcatgatacaaatctta-tatacaatcaaactttaatgaaccttaaacaatttacaatagttttagacaatttcaaaccaaatcct |
22850416 |
T |
|
| Q |
145 |
atatgaaca-aaattactaagttatcaa |
171 |
Q |
| |
|
||||||||| | ||||||||| |||||| |
|
|
| T |
22850417 |
atatgaacatagattactaagctatcaa |
22850444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 13534597 - 13534669
Alignment:
| Q |
25 |
tatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaat |
97 |
Q |
| |
|
||||| |||| ||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
13534597 |
tatgttcaataagatttaatctttgaattgagagattcacgatacaaatcttattatacaatcaaaatttaat |
13534669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 25924620 - 25924748
Alignment:
| Q |
22 |
atatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaaca |
121 |
Q |
| |
|
||||| ||| ||| ||| || ||||||||||||||||| |||||||||||||||| | | | |||||| | ||| | ||||||||| |||||||||| |
|
|
| T |
25924620 |
atatacgtggaataagaatttatcttagaattgagagattcatgatacaaatcttttcacataatcaattatccataatacttgaacaaagtacaaaaca |
25924719 |
T |
|
| Q |
122 |
atagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
| | |||||||||||||| |||||||||| |
|
|
| T |
25924720 |
acacacaatttcaaaccagacctatatga |
25924748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 18565710 - 18565607
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaaccta |
145 |
Q |
| |
|
|||||||||| || ||| ||| ||||||| ||| |||||||||||||||| | ||||||||||| ||||||| ||||||||||| ||| |||||||| |
|
|
| T |
18565710 |
tagaattgagtgattcacaatataaatcttctta-acaatcaaactttaatgtgccttgaacaattaacaaaactttagacaatttcaaaatcaaaccta |
18565612 |
T |
|
| Q |
146 |
tatga |
150 |
Q |
| |
|
||||| |
|
|
| T |
18565611 |
tatga |
18565607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 10492985 - 10492831
Alignment:
| Q |
17 |
gacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtaca |
116 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
10492985 |
gacaaatatatgtgcaataagatttaatcttagaattgagagattcacgatacaaatcctattatacaatcaaactttaattaaccttgagcaatataca |
10492886 |
T |
|
| Q |
117 |
aaac-aatagacaatttcaaaccaaacctatatgaacaaaattactaagttatca |
170 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
10492885 |
caacttttagacaatttcaaaccaaacctatatgaacaatattactaagctatca |
10492831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 16587341 - 16587196
Alignment:
| Q |
12 |
aaagggacaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaat |
111 |
Q |
| |
|
|||| |||||||||||||||||| | | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
16587341 |
aaagagacaaatatatgtgcaataatatttaatcttagaattgagagattcacgatacaaatcttattatacaatcaaactttaatcaaccttgaacagt |
16587242 |
T |
|
| Q |
112 |
gtacaaaac-aatagacaatttcaaaccaaacctatatgaacaaaat |
157 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
16587241 |
atacaaaacttata-acaatttcaaaccaaatctatgtgaacaaaat |
16587196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 15411306 - 15411437
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| || |||||||| |||||| |||||||||| |||||| |
|
|
| T |
15411306 |
caaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatctttatacacaatcaattgttaataaaccttgaacaagttacaaa |
15411405 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
15411406 |
acaatacacaatttcaaaccaaacctatatga |
15411437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 27919243 - 27919367
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatag-acaatttcaaaccaaaccta |
145 |
Q |
| |
|
||||||| ||||| ||| |||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||| | | |||||||||||||||||||| |
|
|
| T |
27919243 |
tagaatttagagattcacgatagaaatcttat-atacaatcaaactttaataaaccttgaacaatatacaaaacttttggacaatttcaaaccaaaccta |
27919341 |
T |
|
| Q |
146 |
tatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
||||||||||||| |||| |||||| |
|
|
| T |
27919342 |
tatgaacaaaattgttaagctatcaa |
27919367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 15452701 - 15452808
Alignment:
| Q |
43 |
atcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaac |
142 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||| || | |||||| |||||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
15452701 |
atcttagaattgagagattcacgatataaatctttatacaaaatcaattgttaataaaccttgaacaagttacaaaacaatacacaatttcaaaccaaac |
15452800 |
T |
|
| Q |
143 |
ctatatga |
150 |
Q |
| |
|
||||||| |
|
|
| T |
15452801 |
atatatga |
15452808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 16835460 - 16835547
Alignment:
| Q |
66 |
atacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaa-accaaacctatatgaacaa |
154 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||| || ||||| |||||||||| |
|
|
| T |
16835460 |
atacaaatcttatt-tacaatcaaactttaatgagccttgaacaat-tacaaaactttagacaatttcaatactaaaccaatatgaacaa |
16835547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 19583901 - 19583985
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaattt |
132 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||| ||||||||||||||||| | ||||||||||| |||||||| |||||||||| |
|
|
| T |
19583901 |
tagaattgagtgattcaaaatataaatcttatt-tacaatcaaactttaatgtgccttgaacaatttacaaaactttagacaattt |
19583985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 39045513 - 39045407
Alignment:
| Q |
42 |
aatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaa |
141 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||| | |||||||||| || ||| ||||||||||| ||||| | | | |||||||||||||||| |
|
|
| T |
39045513 |
aatcttagaattgagagattcacgattcaaatctta-tgtacaatcaaaattcaat-caccttgaacaattaacaaacctagatacaatttcaaaccaaa |
39045416 |
T |
|
| Q |
142 |
cctatatga |
150 |
Q |
| |
|
| ||||||| |
|
|
| T |
39045415 |
cttatatga |
39045407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 96477 - 96630
Alignment:
| Q |
20 |
aaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaa |
119 |
Q |
| |
|
||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
96477 |
aaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatctttttatacaatcaaatattaataaaccttgaacaaggtacaaaa |
96576 |
T |
|
| Q |
120 |
caatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||||| | |||||||| |
|
|
| T |
96577 |
caatacacaatttcaaaccaaccctatgtgaacaaaattactatgctatcaaat |
96630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 14991896 - 14992051
Alignment:
| Q |
18 |
acaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaa |
117 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
14991896 |
acaaatatatgtggaataagatttaatcttagaattgagagattcacgatacaaatcttagtatacaatccaactttaatcaaccttgaacaatatacaa |
14991995 |
T |
|
| Q |
118 |
aac-aatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||| ||| | |||||||||||||||||| ||||||||| ||||| | |||||||| |
|
|
| T |
14991996 |
aacttata-ataatttcaaaccaaacctaagtgaacaaaaatactatgctatcaaat |
14992051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 24427640 - 24427508
Alignment:
| Q |
18 |
acaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaa |
117 |
Q |
| |
|
||||||||||||| ||| ||| || |||| |||||||||||| ||| |||||||||||| | | |||||||| |||| | ||||| ||||| ||||| |
|
|
| T |
24427640 |
acaaatatatgtggaataagattttatctcagaattgagagattcacgatacaaatcttttgacacaatcaattattaacaatccttaaacaagatacaa |
24427541 |
T |
|
| Q |
118 |
aacaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |
|
|
| T |
24427540 |
aacaatatacaatttcaaaccaaacatatatga |
24427508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 21318797 - 21318667
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| | | |||||||| |||| | ||||| ||||| |||||| |
|
|
| T |
21318797 |
caaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatcttttgacacaatcaattattaacaatccttaaacaagatacaaa |
21318698 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |
|
|
| T |
21318697 |
acaatatacaatttcaaacc-aacctatatga |
21318667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 24118002 - 24118133
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| ||||||||| || | |||||||||| |||| | ||| | ||||| |||||| |
|
|
| T |
24118002 |
caaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatattttgatacaatcaactattaacaatccgtaaacaagatacaaa |
24118101 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| |
|
|
| T |
24118102 |
acaatatacaattttaaaccaaacctatatga |
24118133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 28075748 - 28075879
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| ||||||||||| | | |||||||| |||| | ||||| ||||| || ||| |
|
|
| T |
28075748 |
caaatatatgtggaataagattttatcttagaattgagagattcacaatacaaatcttttgacacaatcaattattaacaatccttaaacaagatataaa |
28075847 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
28075848 |
acaatatacaatttcaaaccaaacctatatga |
28075879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 8365661 - 8365765
Alignment:
| Q |
42 |
aatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaa |
141 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||| ||| ||||||||||| || ||| ||||||||||| ||||| | | |||||||||||||||||| |
|
|
| T |
8365661 |
aatcttagaattgagagattcacgattcaaatcatat-atacaatcaaaattcaatca-ccttgaacaattaacaaacctagagacaatttcaaaccaaa |
8365758 |
T |
|
| Q |
142 |
cctatat |
148 |
Q |
| |
|
||||||| |
|
|
| T |
8365759 |
cctatat |
8365765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 19237182 - 19237080
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaaccta |
145 |
Q |
| |
|
|||||||||| || ||| ||||||||| ||||| ||||||||||||||| | |||||||||| | |||||| | ||||||||| |||||||||||| |
|
|
| T |
19237182 |
tagaattgagtgattcacaatacaaatcatatta--caatcaaactttaatgtgtcttgaacaatttgcaaaac-tttgacaatttcaaaaccaaaccta |
19237086 |
T |
|
| Q |
146 |
tatgaa |
151 |
Q |
| |
|
|||||| |
|
|
| T |
19237085 |
tatgaa |
19237080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 19310366 - 19310264
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttc-aaaccaaaccta |
145 |
Q |
| |
|
|||||||||| || ||| ||||||||| ||||| ||||||||||||||| | |||||||||| | |||||| | ||||||||| |||||||||||| |
|
|
| T |
19310366 |
tagaattgagtgattcacaatacaaatcatatta--caatcaaactttaatgtgtcttgaacaatttgcaaaac-tttgacaatttcaaaaccaaaccta |
19310270 |
T |
|
| Q |
146 |
tatgaa |
151 |
Q |
| |
|
|||||| |
|
|
| T |
19310269 |
tatgaa |
19310264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 24752814 - 24752691
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||| || ||||||| || |||||| ||||||||| ||| |||||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |
|
|
| T |
24752814 |
caaatatacatggaatgagattttatcttaatattgagagattcacgatacacatctttttatacaatcaaatatcaata-accttgaacaattaacaaa |
24752716 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacc |
143 |
Q |
| |
|
| | | |||||||||||| ||||| |
|
|
| T |
24752715 |
cctagatacaatttcaaactaaacc |
24752691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 9986665 - 9986820
Alignment:
| Q |
18 |
acaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaa |
117 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
9986665 |
acaaatatatgtgcaataagatttaatcttagaatttagagattcaagatacaaatcttattatacaatcaaactttaatcaaccttgaatagtgtacaa |
9986764 |
T |
|
| Q |
118 |
aac-aatagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||| ||| | |||||||||||||||||| |||||||| ||||| | |||||||| |
|
|
| T |
9986765 |
aacttata-ataatttcaaaccaaacctaagggaacaaaaatactatgctatcaaat |
9986820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 1376987 - 1376863
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaat-agacaatttcaaaccaaaccta |
145 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
1376987 |
tagaattcagagattcatgatacaaatattat-atacaatcaaactttaataaaccttgaacaatatacaaaacatttagacaatttcaaaccaaaccta |
1376889 |
T |
|
| Q |
146 |
tatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
|||| ||| |||| ||||| |||||| |
|
|
| T |
1376888 |
tatggacagaattgctaagctatcaa |
1376863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 11346623 - 11346754
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| ||| |||||||| |||| | ||||||||||| || |||| |
|
|
| T |
11346623 |
caaatatatgtagaataagattttatcttagaattgagagattcacgatacaaatctttttacacaatcaattattaacaatccttgaacaaggttcaaa |
11346722 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
11346723 |
acaatacacaatttcaaaccaaacctatatga |
11346754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 11517765 - 11517896
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||| | ||| ||| || ||||||||||||| ||| ||| |||||||||||| || |||||||| |||||| ||||||| | || |||| |
|
|
| T |
11517765 |
caaatatatgaggaataagattttatcttagaattgaaagattcacgatacaaatctttatacacaatcaattgttaataaaccttgaaataggtgcaaa |
11517864 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
11517865 |
acaatacacaatttcaaaccaaacctatatga |
11517896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 14279656 - 14279526
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| |||| |||||| | |||| ||||||||||| ||||| |
|
|
| T |
14279656 |
caaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatctttttatttaatcaagtatcaata-accttgaacaattaacaaa |
14279558 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
| | | ||||||||||||||||||||||||| |
|
|
| T |
14279557 |
cctagatacaatttcaaaccaaacctatatga |
14279526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 14204844 - 14204945
Alignment:
| Q |
50 |
aattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaacctatatg |
149 |
Q |
| |
|
|||||||||| ||| |||||||||||| | | |||||||| |||| | | ||||||||| |||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
14204844 |
aattgagagattcacgatacaaatcttttaacacaatcaattattaacaattcttgaacaagatacaaaacgatatacaatttcaaaccaaacctatatg |
14204943 |
T |
|
| Q |
150 |
aa |
151 |
Q |
| |
|
|| |
|
|
| T |
14204944 |
aa |
14204945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 86146 - 86288
Alignment:
| Q |
20 |
aaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaa |
119 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||| ||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
86146 |
aaatatatgtgcaataagatttaatca-agaattgatagattcacgatacaaatcttat-atacaatcaaactttaataaaccttgaacaatatataaaa |
86243 |
T |
|
| Q |
120 |
caat-agacaatttcaaaccaaacctatatgaacaaaattactaa |
163 |
Q |
| |
|
| | |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
86244 |
cttttagacaatttcaaacaaaacctatatgagcaaaattactaa |
86288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 16619 - 16745
Alignment:
| Q |
24 |
atatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaat |
123 |
Q |
| |
|
||||||| ||| ||| || ||||||||||| ||||| ||| |||||||||||| ||| |||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
16619 |
atatgtggaataagattttatcttagaattaagagattcacgatacaaatctttttacacaatcaatagttaataatccttgaacaagatacaaaacaat |
16718 |
T |
|
| Q |
124 |
agacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
16719 |
acacaatttcaaaccaaacctatatga |
16745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 1040 - 909
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||| ||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||| ||||||||||| |||||| |
|
|
| T |
1040 |
caaaaatatgtggaataagattttatcttagaattgagagattcacgatacaaatctttttacacaatcaatagttaataatccttgaacaagatacaaa |
941 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||| |
|
|
| T |
940 |
acgatacacaatttcaaactaaacctatatga |
909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1121 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1121
Description:
Target: scaffold1121; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 1889 - 1801
Alignment:
| Q |
66 |
atacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaattt-caaaccaaacctatatgaacaa |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
1889 |
atacaaatcttatta-acaatcaaactttaataagccttgaacaatttacaaaactttagacaatttgaaaaccaaacctatatgaacaa |
1801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0520 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0520
Description:
Target: scaffold0520; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 7445 - 7352
Alignment:
| Q |
79 |
tatacaatcaaactttaatattccttgaacaatgtacaaaacaat-agacaatttcaaaccaaacctatatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
7445 |
tatacaatcaaactttaataaaccttgaacaatataaaaaacttttagacaatttcaaaccaaacccctatgaacaaaattactaagctatcaa |
7352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 69285 - 69411
Alignment:
| Q |
25 |
tatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattata-caatcaaactttaatattccttgaacaatgtacaaaacaat |
123 |
Q |
| |
|
|||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| ||| ||||||| ||| || ||||||||||| || |||||||| |
|
|
| T |
69285 |
tatgtggaataagattttatcttagaattgagagattcacgatacaaatctttttaactcaatcaatagttagtaatccttgaacaagatataaaacaat |
69384 |
T |
|
| Q |
124 |
agacaatttcaaaccaaacctatatga |
150 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
69385 |
acacaatttcaaaccaaacctatatga |
69411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 41792 - 41916
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaac-aatagacaatttcaaaccaaaccta |
145 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||| ||||||||||||| ||||| ||||||||||| |||||||| ||| | || ||||||||||||||| |
|
|
| T |
41792 |
tagaattgagagattcacaatataaatcttat-atacaatcaaactgtaataaaccttgaacaatatacaaaacttataaaaaaattcaaaccaaaccta |
41890 |
T |
|
| Q |
146 |
tatgaacaaaattactaagttatcaa |
171 |
Q |
| |
|
|||||| ||||| |||| | |||||| |
|
|
| T |
41891 |
tatgaaaaaaatcactaggctatcaa |
41916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 14227 - 14176
Alignment:
| Q |
122 |
atagacaatttcaaaccaaacctatatgaacaaaattactaagttatcaaat |
173 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14227 |
atagacaattttaaaccaaacctatatgaacaaaattactaagctatcaaat |
14176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 7317 - 7190
Alignment:
| Q |
19 |
caaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaa |
118 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||||| ||| |||||||||||| | |||||||| |||| | | ||||||||| ||||||| |
|
|
| T |
7317 |
caaatatatgtggaataagaatttatcttagaattgagagattcacgatacaaatctttgtgcacaatcaattattaacaatacttgaacaaggtacaaa |
7218 |
T |
|
| Q |
119 |
acaatagacaatttcaaaccaaacctat |
146 |
Q |
| |
|
||||| |||| ||||||||||| |||| |
|
|
| T |
7217 |
acaatgcacaaattcaaaccaaatctat |
7190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 25676 - 25782
Alignment:
| Q |
40 |
ttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaacca |
139 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||| |||||||||||| || ||| ||||||||||| ||||| | | | |||||||||||||| |
|
|
| T |
25676 |
ttaatcttagaattgagagattcacgattcaaatctta-tatacaatcaaaattcaat-caccttgaacaattaacaaacctagatacaatttcaaacca |
25773 |
T |
|
| Q |
140 |
aacctatat |
148 |
Q |
| |
|
||||||||| |
|
|
| T |
25774 |
aacctatat |
25782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 40487 - 40593
Alignment:
| Q |
40 |
ttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaacca |
139 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||| |||||||||||| || ||| ||||||||||| ||||| | | | |||||||||||||| |
|
|
| T |
40487 |
ttaatcttagaattgagagattcacgattcaaatctta-tatacaatcaaaattcaat-caccttgaacaattaacaaacctagatacaatttcaaacca |
40584 |
T |
|
| Q |
140 |
aacctatat |
148 |
Q |
| |
|
||||||||| |
|
|
| T |
40585 |
aacctatat |
40593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 387 - 469
Alignment:
| Q |
67 |
tacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaa-ccaaacctatatgaa |
151 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |||||||||| ||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
387 |
tacaaatcttatta--caatcaaaacttaatatgtcttgaacaatttacaaaaca-tagacaattttaaaaccaaacctatatgaa |
469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 17603 - 17502
Alignment:
| Q |
47 |
tagaattgagagagtcatgatacaaatcttattatacaatcaaactttaatattccttgaacaatgtacaaaacaatagacaatttcaaaccaaacctat |
146 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||| |||||||| |||| | | ||||||||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
17603 |
tagaattgagtgattcacaatacaaatcttatta--caatcaaaatttattgtaacttgaacaacttgcaaaacc-tagacaatttcaaaccaaacctat |
17507 |
T |
|
| Q |
147 |
atgaa |
151 |
Q |
| |
|
||||| |
|
|
| T |
17506 |
atgaa |
17502 |
T |
|
Back To:
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Target: scaffold0535 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0535
Description:
Target: scaffold0535; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 4410 - 4339
Alignment:
| Q |
18 |
acaaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaa |
89 |
Q |
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|
| T |
4410 |
acaaatatatctggaataagattttatcttagaattgagagattcacgatacaaatcttttgacacaatcaa |
4339 |
T |
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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 66107 - 66036
Alignment:
| Q |
20 |
aaatatatgtgcaatgagacttaatcttagaattgagagagtcatgatacaaatcttattatacaatcaaactt |
93 |
Q |
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|||| |||||||||||||| |||||| | |||||| ||| ||| ||||||||||||| ||||||||||||||| |
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|
| T |
66107 |
aaatctatgtgcaatgagatataatctaa-aattgaaagattcacgatacaaatctta-tatacaatcaaactt |
66036 |
T |
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