View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20437_low_3 (Length: 717)
Name: NF20437_low_3
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 5 - 702
Target Start/End: Original strand, 43665673 - 43666366
Alignment:
| Q |
5 |
gcagagaaaaggtaaaactaaaacaaattctgaaaagtttgaacactatacacatccaatcattcatgaccagtaaccactacattgattatggttgatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665673 |
gcagagaaaaggtaaaactaaaacaaattctgaaaagtttgaacactatacacatccaatcattcatgaccagtaaccactacattgattatggttgatc |
43665772 |
T |
|
| Q |
105 |
tggaagatgactcagtctaaactagaactacttaaaagacattctacaaactctaaaggaaagtgctaatttcagcttcaaagaagaaagcagtgctgat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665773 |
tggaagatgactcagtctaaactagaactacttaaaagacattctacaaactctaaagtaaagtgctaatttcagcttcaaagaagaaagcagtgctgat |
43665872 |
T |
|
| Q |
205 |
taaattaattagctaacctccctataattacgcaccaaaccttcaggttccagtggtgctatagttacaattgtttcgggcaccggaaacaacataggtt |
304 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665873 |
taaatt----agctaacctccctataattacgcaccaaaccttcaggttccagtggtgctatagttacaattgtttcgggcaccggaaacaacataggtt |
43665968 |
T |
|
| Q |
305 |
gtggttgggatgaactaccttgtgacccaacaattttgttacaagtttcaataaggcactgtctacatttcggacaagacgaatgcgaacttagccattt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665969 |
gtggttgggatgaactaccttgtgacccaacaattttgttacaagtttcaataaggcactgtctacatttcggacaagacgaatgcgaacttagccattt |
43666068 |
T |
|
| Q |
405 |
gtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacacactccgagtcc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43666069 |
gtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacacactccgagtcc |
43666168 |
T |
|
| Q |
505 |
aaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattccagtgtttgccgctcgaactggaatgttgt |
604 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43666169 |
aaactcggcaatttcagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattccagtgtttgccgctcgaactggaatgttgt |
43666268 |
T |
|
| Q |
605 |
tagcggagcgatcaccactcatcacaactaaattggaacattttaatgcacaccttatgattgagttcaaacaaagtgaacaaataagagcacataat |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43666269 |
tagcggagcgatcaccactcatcacaactaaattggaacattttaatgcacaccttatgattgagttcaaacaaagtgaacaaataagagcacataat |
43666366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 395 - 575
Target Start/End: Original strand, 38840846 - 38841026
Alignment:
| Q |
395 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||| || || || || |||||||| || |||||||||| ||| |
|
|
| T |
38840846 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcataca |
38840945 |
T |
|
| Q |
495 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
575 |
Q |
| |
|
|| | ||||||||| || | ||| | ||| |||||| || ||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
38840946 |
ttctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattcc |
38841026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 395 - 575
Target Start/End: Original strand, 38858584 - 38858764
Alignment:
| Q |
395 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||| || || || || |||||||| || |||||||||| ||| |
|
|
| T |
38858584 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcataca |
38858683 |
T |
|
| Q |
495 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
575 |
Q |
| |
|
|| | ||||||||| || | ||| | ||| |||||| || ||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
38858684 |
ttctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattcc |
38858764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 395 - 575
Target Start/End: Original strand, 38864913 - 38865093
Alignment:
| Q |
395 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
494 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || || ||||||| |||||| || || || || || ||||| || |||||||| | ||| |
|
|
| T |
38864913 |
ttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataataca |
38865012 |
T |
|
| Q |
495 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
575 |
Q |
| |
|
||| | |||||||| || | ||| | |||| |||| || || ||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
38865013 |
ctctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcc |
38865093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 395 - 575
Target Start/End: Original strand, 38827058 - 38827238
Alignment:
| Q |
395 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
494 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || || || ||||||| |||||| || || || || ||||| || || |||||||||||||| |
|
|
| T |
38827058 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacaca |
38827157 |
T |
|
| Q |
495 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
575 |
Q |
| |
|
||| | |||||| | || | ||||| |||| ||| ||||| ||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
38827158 |
ctctgtatccaaagttggtagttttaactcagttgaataacttactgttggaaatgtcttgagagctttcttcttgattcc |
38827238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 395 - 575
Target Start/End: Original strand, 38846666 - 38846846
Alignment:
| Q |
395 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
494 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || || || ||||||| |||||| || || || || ||||| || || |||||||||||||| |
|
|
| T |
38846666 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacaca |
38846765 |
T |
|
| Q |
495 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
575 |
Q |
| |
|
||| | |||||| | || | ||| | |||| ||| ||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
38846766 |
ctctgtatccaaagttggtagtttcaactcagttgaataacttactgttgggaatgtcttgagagctttcttcttgattcc |
38846846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 395 - 490
Target Start/End: Complemental strand, 38851058 - 38850963
Alignment:
| Q |
395 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatca |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||| ||| || || || |||||||| || |||||||||| |
|
|
| T |
38851058 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatca |
38850963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 38861458 - 38861553
Alignment:
| Q |
395 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatca |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||| ||| || || || |||||||| || |||||||||| |
|
|
| T |
38861458 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatca |
38861553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University