View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_30 (Length: 347)
Name: NF20437_low_30
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 39841841 - 39841524
Alignment:
| Q |
18 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagactagtcttatcccctttttcgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39841841 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagactagccttatcccctttttcgtt |
39841742 |
T |
|
| Q |
118 |
gaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaaatggtagactacatgatattccttctaagacaaagaatatatattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
39841741 |
gaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaaatggtagactaaataatattccttctaagacaaagaatatatattca |
39841642 |
T |
|
| Q |
218 |
cagcccaagcatcaggcctgtacagttcatcaaccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccgcaaccc |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39841641 |
cagcccaagcatcaggcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccgcaaccc |
39841542 |
T |
|
| Q |
318 |
ctatccggacacaggttc |
335 |
Q |
| |
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||||| ||||| |||||| |
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| T |
39841541 |
ctatctggacaaaggttc |
39841524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 39846893 - 39846576
Alignment:
| Q |
18 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagactagtcttatcccctttttcgtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39846893 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttt-gttaggagttagctaacatccagactagccttatcccctttttcgtt |
39846795 |
T |
|
| Q |
118 |
gaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaaatggtagactacatgatattccttctaagacaaagaa-tatatattc |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
39846794 |
gaacaaaaaactcaattgatattcacacgaaatgtaaagtagctgagtgcaaaatggtagactacataatattccttctaagacagagaattatatattc |
39846695 |
T |
|
| Q |
217 |
acagcccaagcatcaggcctgtacagttcatcaaccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccgcaacc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846694 |
acagcccaagcatcaggcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccgcaacc |
39846595 |
T |
|
| Q |
317 |
cctatccggacacaggttc |
335 |
Q |
| |
|
|||||||||||| |||||| |
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| T |
39846594 |
cctatccggacaaaggttc |
39846576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 44796471 - 44796789
Alignment:
| Q |
18 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagactagtcttatcccctttttcgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
44796471 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagactagccttatcccctttttcgtt |
44796570 |
T |
|
| Q |
118 |
gaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaaatggtagactacatgatattccttctaagacaaagaa-tatatattc |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |
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|
| T |
44796571 |
gaacaaaaaactcaattgatattcaaatgaaatgtaaagtagctgagtgcaaaatggtagactacataatattccttctaagacagagaattatatattc |
44796670 |
T |
|
| Q |
217 |
acagcccaagcatcaggcctgtacagttcatcaaccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccgcaacc |
316 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44796671 |
acagcccaagcatcaagcctgtacaattcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccgcaacc |
44796770 |
T |
|
| Q |
317 |
cctatccggacacaggttc |
335 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
44796771 |
cctatccggacaaaggttc |
44796789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 35163712 - 35163393
Alignment:
| Q |
18 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagactagtcttatcccctttttcgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
35163712 |
agaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatctagactagccttatcccctttttcgtt |
35163613 |
T |
|
| Q |
118 |
gaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaaatggtagactacatgatattccttctaagacaaagaa-tatatattc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
35163612 |
gaacaaaaaactcaattgatattcacatgaaatgtaaagtagctaagtgcaaaatggtagactacataatattccttctaagacaaagaattatatattc |
35163513 |
T |
|
| Q |
217 |
acagcccaagcatcaggcctgtacagttcatcaaccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccacccc-gcaac |
315 |
Q |
| |
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||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35163512 |
acagcccaagcatcaagcctgtacagtgcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccggcaac |
35163413 |
T |
|
| Q |
316 |
ccctatccggacacaggttc |
335 |
Q |
| |
|
||||||||||| | |||||| |
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|
| T |
35163412 |
ccctatccggataaaggttc |
35163393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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