View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_31 (Length: 341)
Name: NF20437_low_31
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 114 - 331
Target Start/End: Original strand, 30804512 - 30804728
Alignment:
| Q |
114 |
tttgcttcagccaatcaagaagttctgtgagagtaggtttgtcttttataatcccatctttcccaaacatttcaaatcaaatcttgatgcttgatgattc |
213 |
Q |
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| T |
30804512 |
tttgcttcagccaatcaagaagttctgtgagagtataattgtcttttataatccaa-ctttcccaaacatttcaaatcaaatcttgatgcttgatgattc |
30804610 |
T |
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| Q |
214 |
ttgttgaaaccctattactaatgaacatgttctttaaatgtgttcatgtatgaatgtgactatcaaatcataaggccagggtgaaataggtaatcttcaa |
313 |
Q |
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| T |
30804611 |
ttgttgaaactctattactaatgaacatgttctttaaatgtgttcatgtatgaatgtgactatcaaatcataaggccagggtgaaataggtaatcttcaa |
30804710 |
T |
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| Q |
314 |
atgtttcacaaattcatc |
331 |
Q |
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| T |
30804711 |
atgtttcacaaattcatc |
30804728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 30803720 - 30803842
Alignment:
| Q |
1 |
aaacaagagatgaggttaggagaagaatgttgacatcacaatttccataccctctttccttggcattc------ttataagaatctacactcaaatttcc |
94 |
Q |
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| T |
30803720 |
aaacaagagaagaggttaggagaagaatgttgacatcacaatttccatatcctctttccttggcattctcttatttataagggtttatattcaaatttcc |
30803819 |
T |
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| Q |
95 |
tatattgccctttaaactatttg |
117 |
Q |
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| T |
30803820 |
tatattgccctttaagctatttg |
30803842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 30812115 - 30812206
Alignment:
| Q |
118 |
cttcagccaatcaagaagttctgtgagagtaggtttgtcttttataatcccatctttcccaaacatttcaaatcaaatcttgatgcttgatga |
210 |
Q |
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| T |
30812115 |
cttcagccaatcaagaagctccctgagagtaggattgtcttttataat-ccatctatcccatacagtccaactcaaatcttgatgcttgatga |
30812206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 30799987 - 30800068
Alignment:
| Q |
183 |
tttcaaatcaaatcttgatgcttgatgattcttgttgaaaccctattactaatgaacatgttctttaaatgtgttcatgtat |
264 |
Q |
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| T |
30799987 |
tttcaactcaaatcatgatgcttgattatccttgctggaactctattactaaagaacatgtcctttaaatgtgttcatgtat |
30800068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 30831221 - 30831312
Alignment:
| Q |
118 |
cttcagccaatcaagaagttctgtgagagtaggtttgtcttttataatcccatctttcccaaacatttcaaatcaaatcttgatgcttgatga |
210 |
Q |
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| T |
30831221 |
cttcaaccaatcaagaagctccctgagagtaggattgtcttttataat-ccatctgtcccatacagtccaactcaaatcttgatgcttgatga |
30831312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 23555414 - 23555323
Alignment:
| Q |
118 |
cttcagccaatcaagaagttctgtgagagtaggtttgtcttttataatcccatctttcccaaacatttcaaatcaaatcttgatgcttgatga |
210 |
Q |
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| T |
23555414 |
cttcagccaatcaagaagctccctgagagtaggattgtcttttataat-ccatctgtctcatacaggccaactcaaatattgatgcttgatga |
23555323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42624140 - 42624072
Alignment:
| Q |
1 |
aaacaagagatgaggttaggagaagaatgttgacatcacaatttccataccctctttccttggcattct |
69 |
Q |
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| T |
42624140 |
aaacaagaggagaggttaggagaagaatgttgacatcacaattttcatgccttttttccttggctttct |
42624072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31230302 - 31230349
Alignment:
| Q |
1 |
aaacaagagatgaggttaggagaagaatgttgacatcacaatttccat |
48 |
Q |
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| T |
31230302 |
aaacaagagaagaggttaggaggagaatgttgacatcacaatttccat |
31230349 |
T |
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