View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_33 (Length: 331)
Name: NF20437_low_33
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 42966436 - 42966252
Alignment:
| Q |
129 |
gtgtaagtttgtataaatgtgtgtgtatacacacatagatatatatggaacttccttnnnnnnnn--cttactctcccacataaaaatattcacttttaa |
226 |
Q |
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| T |
42966436 |
gtgtaagtttgtataaatgtgtgtgtgtgcacacatagatatat--ggaacttccttaaaaaaaaaacttactctcccacataaaaatattcacttttaa |
42966339 |
T |
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| Q |
227 |
gttgannnnnnnn-atgtaaattgagtattctctgattacaactataaagttaaagactaatcctttgaaccgagcatggtcgtaat |
312 |
Q |
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| T |
42966338 |
gttgatttttttttatgtaaattgagtattctctgattacaactataaagttaaagactaatcccttgaaccgagcatggtcgtaat |
42966252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42966564 - 42966500
Alignment:
| Q |
1 |
aacccacccatgaaccttaattgttttccttgtatccaaccattgttcaaagggatgaacaatct |
65 |
Q |
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| T |
42966564 |
aacccacccatgaaccttaattgttttccttttatccaaccattgttcaaagggatgaacaatct |
42966500 |
T |
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