View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_34 (Length: 329)
Name: NF20437_low_34
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 52769931 - 52770083
Alignment:
| Q |
18 |
cagacattccatttcttttttcatttatcaataggagtaggaggaggatcatctaaataatttaatactatttcttctattctatattaatattaattca |
117 |
Q |
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| T |
52769931 |
cagacatttcatttcttttttcatttatcaataggag---gaggaggatcatctaaataatttaatactctttcttctattctatattaatattaattca |
52770027 |
T |
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| Q |
118 |
aaaatactaatttctttcataacaactacaacagtaacaacattaattaattaatt |
173 |
Q |
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| T |
52770028 |
aaaatactaatttctttcataacaactacaacagcaacaacattaattaattaatt |
52770083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 52770117 - 52770263
Alignment:
| Q |
170 |
aatttgaaggaatgtgaaggttgcttttcttctcatttttctaattctggtgttacatacatgatcaacacattctaactactgtttttcttacttgtcc |
269 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52770117 |
aatttgaaggaatgtgaatgttgcttttcttctcatttttctaattctggtgttacatacatgatcaacacattctaactactgtttttcttacttgtcc |
52770216 |
T |
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| Q |
270 |
annnnnnnatatctcattaagaccaactgcatacattcaaattttct |
316 |
Q |
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| T |
52770217 |
atttttttatatctcattaagaccaactgcatacattcaaattttct |
52770263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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