View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_38 (Length: 305)
Name: NF20437_low_38
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 19176137 - 19175912
Alignment:
| Q |
13 |
aaaataaaattactaaaacagtaatcaactatagaagaaaatttacaagatttaaccatagaaagcnnnnnnnnnn-gacttaacaatagttgttccaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
19176137 |
aaaataaaattactaaaacagtaatcaactatagaagaaaatttacaagatttaaccatagaaagctttttttttttgtcttaacaatagttgttccaat |
19176038 |
T |
|
| Q |
112 |
aaaagttcgaactcagttactccaatcaattcgactttcagtgaaactcattaaccatttgagcttaacaacttgattcaaaaataattactaccaatga |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19176037 |
aaaagttcaaactcagttactccaatcaattcgactttcagtgaaactcattaaccatttgagcttaacagcttgattcaaaaataattactaccaatga |
19175938 |
T |
|
| Q |
212 |
cttatgacacaagatacgaatgattg |
237 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
19175937 |
cttatgacacaagatacgaatgattg |
19175912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 287
Target Start/End: Complemental strand, 19175893 - 19175862
Alignment:
| Q |
256 |
tttgctctatagtggaggatgtggccggtgtc |
287 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
19175893 |
tttgctctatagtggaggatgtggccggtgtc |
19175862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 25385922 - 25385954
Alignment:
| Q |
136 |
atcaattcgactttcagtgaaactcattaacca |
168 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
25385922 |
atcagttcgactttcagtgaaactcattaacca |
25385954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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