View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_39 (Length: 305)
Name: NF20437_low_39
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 1747310 - 1747589
Alignment:
| Q |
3 |
gaaaccttctcaataacctgctgattttattatcattttcaaatgtcaattcccacgggcaagcatccaaattattcacccaagatagagcattctttga |
102 |
Q |
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| T |
1747310 |
gaaaccttctcaataacctgctgattctattatcattctcaaatgtcaattcccacgggcaagcatccaaattattcacccaagatagagcattctttga |
1747409 |
T |
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| Q |
103 |
gtcaaactcaattgtgatctcaccatgtttaagccataaccactaacatatatatatagctccaatgcaaacaacacatctaagaattcagcttgaattt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1747410 |
gtcaaactcaattgtgatctcaccatgtttaagccacaaccactaac----atatatagctccaatgcaaacaacacatctaagaattcagcttgaattt |
1747505 |
T |
|
| Q |
203 |
ctcgtgtttgattagtattttttaagatgacatgagtaaacaagtttttatgtaatattttgaccatcaaacattgcaggtttatg |
288 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1747506 |
atcgtgtttgattagta-tttttaagatgacatgagtaaacaa-tttttatgtaatattttgaccatcaaacattgcaggtttatg |
1747589 |
T |
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