View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20437_low_4 (Length: 668)

Name: NF20437_low_4
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20437_low_4
NF20437_low_4
[»] chr6 (11 HSPs)
chr6 (1-375)||(33576123-33576497)
chr6 (381-521)||(33576675-33576819)
chr6 (2-132)||(19746680-19746810)
chr6 (2-132)||(5978981-5979111)
chr6 (5-132)||(33568941-33569068)
chr6 (164-372)||(5979182-5979390)
chr6 (2-105)||(34861884-34861987)
chr6 (293-353)||(34861615-34861675)
chr6 (520-571)||(33576850-33576901)
chr6 (50-99)||(14749399-14749448)
chr6 (6-99)||(24254445-24254538)
[»] scaffold0707 (3 HSPs)
scaffold0707 (5-375)||(5335-5705)
scaffold0707 (381-521)||(5883-6027)
scaffold0707 (520-571)||(6058-6109)
[»] chr3 (6 HSPs)
chr3 (2-137)||(36340069-36340204)
chr3 (385-476)||(36340541-36340632)
chr3 (65-102)||(3837926-3837963)
chr3 (6-95)||(25901302-25901391)
chr3 (6-95)||(25915320-25915409)
chr3 (50-99)||(32578884-32578933)
[»] chr5 (1 HSPs)
chr5 (2-111)||(23086736-23086845)
[»] chr7 (27 HSPs)
chr7 (18-137)||(24031225-24031344)
chr7 (18-137)||(24021738-24021857)
chr7 (43-111)||(23999462-23999530)
chr7 (6-107)||(26256733-26256834)
chr7 (6-99)||(16839400-16839493)
chr7 (50-105)||(22063644-22063699)
chr7 (20-107)||(23993507-23993594)
chr7 (9-95)||(19637240-19637326)
chr7 (49-102)||(6864823-6864876)
chr7 (2-107)||(15443918-15444023)
chr7 (6-99)||(16846483-16846576)
chr7 (42-99)||(24002193-24002250)
chr7 (50-107)||(26217969-26218026)
chr7 (6-99)||(36263011-36263104)
chr7 (6-102)||(19597671-19597767)
chr7 (17-105)||(22070080-22070168)
chr7 (65-105)||(22100510-22100550)
chr7 (20-107)||(24016760-24016847)
chr7 (57-99)||(19357919-19357961)
chr7 (50-99)||(660866-660915)
chr7 (6-99)||(19344594-19344687)
chr7 (50-99)||(19722020-19722069)
chr7 (42-99)||(24010377-24010434)
chr7 (50-107)||(26230219-26230276)
chr7 (65-105)||(22080885-22080925)
chr7 (43-107)||(24035746-24035810)
chr7 (43-95)||(36260248-36260300)
[»] chr8 (4 HSPs)
chr8 (17-137)||(11339400-11339520)
chr8 (17-137)||(11345082-11345202)
chr8 (17-133)||(11358964-11359080)
chr8 (17-127)||(11338567-11338677)
[»] chr4 (6 HSPs)
chr4 (9-127)||(23840636-23840754)
chr4 (9-127)||(23847168-23847286)
chr4 (1-112)||(8443460-8443571)
chr4 (6-107)||(10460583-10460684)
chr4 (18-99)||(53774810-53774891)
chr4 (6-95)||(35766976-35767065)
[»] chr2 (4 HSPs)
chr2 (50-112)||(25377076-25377138)
chr2 (50-99)||(18908828-18908877)
chr2 (50-99)||(18913576-18913625)
chr2 (50-99)||(18920784-18920833)
[»] chr1 (2 HSPs)
chr1 (32-112)||(50645491-50645571)
chr1 (43-99)||(39379080-39379136)
[»] scaffold0267 (1 HSPs)
scaffold0267 (65-102)||(13407-13444)
[»] scaffold0867 (1 HSPs)
scaffold0867 (65-105)||(4682-4722)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 33576123 - 33576497
Alignment:
Q  1 agttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576123 agttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcag 33576222  T
Q  101 ttatttagaattgaatacgttaatcttaaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatattta 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576223 ttatttagaattgaatacgttaatcttcaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatattta 33576322  T
Q  201 caactgaaataaccaacaaagtatttatctataatcggcaagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccattga 300  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576323 caactgaaataaccaacaaagtatttatctataatcggagagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccattga 33576422  T
Q  301 atacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576423 atacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 33576497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 381 - 521
Target Start/End: Original strand, 33576675 - 33576819
Alignment:
Q  381 ttgtttttatgttatattaattatactccagaaaatgattctcacaaaagagtatttattcccacttgcatattacagaaaagcctaagcacaaataaaa 480  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33576675 ttgtttttatgttatattaattatactctagaaaatgattctcacaaaggagtatttattcccacttgcatattacagaaaatcctaagcacaaataaaa 33576774  T
Q  481 cta----ggattaatttagtaacnnnnnnncccttaataaatcaa 521  Q
    |||    ||||||||||||||||       |||||||||||||||    
T  33576775 ctagccgggattaatttagtaacaaaaaaacccttaataaatcaa 33576819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 19746810 - 19746680
Alignment:
Q  2 gttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagt 101  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||  ||    
T  19746810 gttctgatggactgcctttgcttttcgcacgatttcaagggaactgaatttgttatatggcaaatgaagaagtttggagttcaagagtcttggactttgt 19746711  T
Q  102 tatttagaattgaatacgttaatcttaaaat 132  Q
    ||||||||||||| ||| |||||||| ||||    
T  19746710 tatttagaattgactactttaatcttgaaat 19746680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 5978981 - 5979111
Alignment:
Q  2 gttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagt 101  Q
    ||||||||||| || ||||| |||||||| ||||| ||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5978981 gttctgatggattgtctttgcttttcgcatgatttcaagagaaccgaatttgttatatggctgatgaaggagtttggagtccaagagtcttggactcagt 5979080  T
Q  102 tatttagaattgaatacgttaatcttaaaat 132  Q
    |||||||| ||||||| ||||||||| ||||    
T  5979081 tatttagatttgaatatgttaatcttcaaat 5979111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 33568941 - 33569068
Alignment:
Q  5 ctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttat 104  Q
    |||||||||||  ||||||||||||||||||| ||| | ||||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||    
T  33568941 ctgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttat 33569040  T
Q  105 ttagaattgaatacgttaatcttaaaat 132  Q
    ||||||||||||| ||||||||| ||||    
T  33569041 ttagaattgaatatgttaatcttcaaat 33569068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 164 - 372
Target Start/End: Original strand, 5979182 - 5979390
Alignment:
Q  164 ttgtacttttcgaagaatggagatacattgatatttacaactgaaataaccaacaaagtatttatctataatcggcaagataagacagtagagataacaa 263  Q
    |||||| ||||||||||||||||||||||||| || |||| ||| | |  ||| | |||| ||||||||||||||  |||||||| |||||||| ||       
T  5979182 ttgtacctttcgaagaatggagatacattgatcttgacaaatgataaagacaaaagagtaattatctataatcggagagataagagagtagagagaattg 5979281  T
Q  264 tatttgacaacagaatacgttggacatcggccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtt 363  Q
     | ||  ||||| |||| |||||   || |||||||| ||| |||||||||| ||| | |||| ||||||||||||||||||| |   ||| ||||||||    
T  5979282 gaatttccaacaaaataagttggttctccgccattgattacattgaaagcttggtttcgactcattggaagtaagttctcttctatcattttcaattgtt 5979381  T
Q  364 tgaatctat 372  Q
    |||||||||    
T  5979382 tgaatctat 5979390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 34861987 - 34861884
Alignment:
Q  2 gttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagt 101  Q
    |||||| |||| |||||||| |||| ||| ||||||| |  |||||||||||||||||||   |||||||||||||||||||  ||||||||||||| ||    
T  34861987 gttctgttggattgcctttgctttttgcatgattttaggaaaactgaatttgttatatggcaaatgaaggagtttggagttcgggagtcttggactcggt 34861888  T
Q  102 tatt 105  Q
    ||||    
T  34861887 tatt 34861884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 34861675 - 34861615
Alignment:
Q  293 gccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtt 353  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34861675 gccatggattacgttgaaagcttagttccgactccttggaagtaagttctcttctactgtt 34861615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 33576850 - 33576901
Alignment:
Q  520 aagtggcagtgttaaacataatttcattaacagatggatgtgagcaggaata 571  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  33576850 aagtggcagtgttaaacataatttcattaacaaatggatgtgagcaagaata 33576901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 14749399 - 14749448
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||| |||||| ||||| ||| ||||||||||||||||||||||||||    
T  14749399 tttgttttatggaggatgatggaatttggagttcaagagtcttggactca 14749448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 24254538 - 24254445
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||||||||||||||||||| ||| || | ||| ||||| | ||||||||||||  ||||  ||| ||||||||  || | |||||||||||    
T  24254538 tgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactca 24254445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 5335 - 5705
Alignment:
Q  5 ctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttat 104  Q
    |||||||||||  ||||||||||||||||||| ||| | ||||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||    
T  5335 ctgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttat 5434  T
Q  105 ttagaattgaatacgttaatcttaaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatatttacaac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5435 ttagaattgaatacgttaatcttcaaatacatactatgaatggagatacattgctgccattgtacttttcgaagaatggagatacattgatatttacaac 5534  T
Q  205 tgaaataaccaacaaagtatttatctataatcggcaagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccattgaatac 304  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5535 tgaaataaccaacaaagtatttatctataatcggagagataagacagtagagataacaatatttgacaacagaatacgttggacatcggccattgaatac 5634  T
Q  305 gttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5635 gttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 5705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 381 - 521
Target Start/End: Original strand, 5883 - 6027
Alignment:
Q  381 ttgtttttatgttatattaattatactccagaaaatgattctcacaaaagagtatttattcccacttgcatattacagaaaagcctaagcacaaataaaa 480  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5883 ttgtttttatgttatattaattatactctagaaaatgattctcacaaaggagtatttattcccacttgcatattacagaaaatcctaagcacaaataaaa 5982  T
Q  481 cta----ggattaatttagtaacnnnnnnncccttaataaatcaa 521  Q
    |||    ||||||||||||||||       |||||||||||||||    
T  5983 ctagccgggattaatttagtaacaaaaaaacccttaataaatcaa 6027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 6058 - 6109
Alignment:
Q  520 aagtggcagtgttaaacataatttcattaacagatggatgtgagcaggaata 571  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  6058 aagtggcagtgttaaacataatttcattaacaaatggatgtgagcaagaata 6109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 36340069 - 36340204
Alignment:
Q  2 gttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagt 101  Q
    |||||||||||||||||||| ||||| |||||||| ||| ||||||||||||| ||||||  ||||||||||||||||  ||||||||||||||||||||    
T  36340069 gttctgatggactgcctttgcttttcacacgatttcaagagaactgaatttgtgatatggcagatgaaggagtttggatctcaagagtcttggactcagt 36340168  T
Q  102 tatttagaattgaatacgttaatcttaaaatacata 137  Q
    ||||||||||| ||||| |||||||| |||| ||||    
T  36340169 tatttagaattaaatacattaatcttcaaatccata 36340204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 476
Target Start/End: Original strand, 36340541 - 36340632
Alignment:
Q  385 ttttatgttatattaattatactccagaaaatgattctcacaaaagagtatttattcccacttgcatattacagaaaagcctaagcacaaat 476  Q
    |||||| |||||||||| |||  |||||| ||||||||||| |||||| |||| ||||  |||| |||||||||||||   |||||||||||    
T  36340541 ttttattttatattaataatatcccagaagatgattctcaccaaagaggatttgttccatcttggatattacagaaaaagttaagcacaaat 36340632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 3837926 - 3837963
Alignment:
Q  65 atgaaggagtttggagttcaagagtcttggactcagtt 102  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3837926 atgaaagagtttggagttcaagagtcttggactcagtt 3837963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 25901391 - 25901302
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 95  Q
    ||||||||| ||||||||||   || ||||| |||||||   | |||||||||||||  |||||||| ||| ||||||||||||||||||    
T  25901391 tgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 25901302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 25915409 - 25915320
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 95  Q
    ||||||||| ||||||||||   || ||||| |||||||   | |||||||||||||  |||||||| ||| ||||||||||||||||||    
T  25915409 tgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 25915320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 32578933 - 32578884
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||| |||||||||||| |||||  |||||||| ||||||||||||||    
T  32578933 tttgttttatggatgatgatggagtacggagttcacgagtcttggactca 32578884  T

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Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 23086736 - 23086845
Alignment:
Q  2 gttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagt 101  Q
    ||||||| |||||||||||| |||||||| |||||||||   | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  23086736 gttctgaaggactgcctttgcttttcgcatgattttaagacgattgaatttgttatatggcagatgaaggagtttggagttcaagagtcttggactcagt 23086835  T
Q  102 tatttagaat 111  Q
    | ||||||||    
T  23086836 tgtttagaat 23086845  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 24031225 - 24031344
Alignment:
Q  18 tttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaata 117  Q
    |||| |||||||||||||| |||  |||||||||||| |||||||  ||||| |||||||||||||||||||||||||||||  ||||||||||||  ||    
T  24031225 tttgcttttcgcacgatttcaagaaaactgaatttgtcatatggaaaatgaatgagtttggagttcaagagtcttggactcaactatttagaattggcta 24031324  T
Q  118 cgttaatcttaaaatacata 137  Q
    | |||||||| |||| ||||    
T  24031325 ctttaatcttgaaatgcata 24031344  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 24021738 - 24021857
Alignment:
Q  18 tttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaata 117  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||||  ||||| ||||||||| ||| ||||||||||||||   |||||||||||| |||    
T  24021738 tttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggaattcgagagtcttggactcgactatttagaattggata 24021837  T
Q  118 cgttaatcttaaaatacata 137  Q
    | || ||||| |||| ||||    
T  24021838 ctttgatcttgaaatgcata 24021857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 23999530 - 23999462
Alignment:
Q  43 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaat 111  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||| |||||| |||||||||||||    
T  23999530 aactgaatttgttatatggaaaatgaaggagtttggagttcaaaagtcgtggacttagttatttagaat 23999462  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 26256733 - 26256834
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 105  Q
    ||||||| |||||||||||||| || |||   |||| || ||| |||||| |||||  ||||||||||| |||||||||||||||||||||||| |||||    
T  26256733 tgatggaatgcctttgtttttctcatgataccaaggaaaatgattttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaattatt 26256832  T
Q  106 ta 107  Q
    ||    
T  26256833 ta 26256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 16839493 - 16839400
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||||||||||||||||||| || | | |||||  |||| |  |||||||||||| |||||  || | ||||||||||||||||||||||||    
T  16839493 tgatggactgcctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactca 16839400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 22063644 - 22063699
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 105  Q
    ||||||||||||   |||||||| |||||| |||||||||||||||||||||||||    
T  22063644 tttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttatt 22063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 23993507 - 23993594
Alignment:
Q  20 tgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 107  Q
    |||||||| |||||||  || | ||||||||||||| |||||   ||||||||||  || |||||||||||||||||||| |||||||    
T  23993507 tgtttttctcacgattccaatgaaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattattta 23993594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 19637326 - 19637240
Alignment:
Q  9 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 95  Q
    |||||| |||||| || || || |||||||| |||||||| ||| ||||||||   |||||||| ||||||||||||||||| ||||    
T  19637326 tggactccctttgcttgtctcatgattttaatggaactgattttattatatggcaaatgaaggaatttggagttcaagagtcgtgga 19637240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 6864876 - 6864823
Alignment:
Q  49 atttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagtt 102  Q
    |||||| |||||| | |||||||| ||||||||| |||||||||||||||||||    
T  6864876 atttgtaatatggttaatgaaggaatttggagttgaagagtcttggactcagtt 6864823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 15443918 - 15444023
Alignment:
Q  2 gttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagt 101  Q
    ||||||||||| || |||||||||||  | ||||  ||   ||||| ||||||| |||||   |||||||||| ||||||| |||||||||||||||| |    
T  15443918 gttctgatggattgtctttgtttttcttatgattccaatacaactggatttgttttatggcatatgaaggagtatggagttgaagagtcttggactcaat 15444017  T
Q  102 tattta 107  Q
    ||||||    
T  15444018 tattta 15444023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 16846576 - 16846483
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||||||||||||||||||| || | | | |||  |||| |  |||||||||||| |||||  || | ||||||||||||||||||||||||    
T  16846576 tgatggactgcctttgtttttctcatgttgtcaagcaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactca 16846483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 24002193 - 24002250
Alignment:
Q  42 gaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||||||||||| |||||   ||||||||||  |||||||||||||||||||||||    
T  24002193 gaactgaatttgttttatggcatatgaaggagtacggagttcaagagtcttggactca 24002250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 26217969 - 26218026
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 107  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||| |||| |||||||    
T  26217969 tttgttttatggcagatgaaggagtatggagttcaagagtcttggtctcaattattta 26218026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 36263011 - 36263104
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||||||| ||||| |||||  | || | ||||  |||||| ||||||||||||| |||| | || ||||||||| ||||||||||||||||    
T  36263011 tgatggactgtctttgcttttctaatgactataagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggactca 36263104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 19597767 - 19597671
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagtt 102  Q
    ||||||| | |||||||||||  || |||||| | |||||||| ||| | ||||||  ||||||||| |||| |||| ||||||| |||||||||||    
T  19597767 tgatggattccctttgtttttgtcatgattttcatggaactgattttatcatatggcagatgaaggaatttgaagttgaagagtcatggactcagtt 19597671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 22070080 - 22070168
Alignment:
Q  17 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 105  Q
    ||||||||||| || ||||| ||  ||||| | ||| ||||||||   |||||| | ||||||||||||||||||||||||| ||||||    
T  22070080 ctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttatt 22070168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 22100510 - 22100550
Alignment:
Q  65 atgaaggagtttggagttcaagagtcttggactcagttatt 105  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  22100510 atgaagaaatttggagttcaagagtcttggactcagttatt 22100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 24016760 - 24016847
Alignment:
Q  20 tgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 107  Q
    |||||||| || ||||| |||  || |||||||||| |||||  ||||||||||| |||  ||||||||||||||||| | |||||||    
T  24016760 tgtttttctcatgatttcaagaaaagtgaatttgttttatggcagatgaaggagtatgggtttcaagagtcttggactaaattattta 24016847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 19357919 - 19357961
Alignment:
Q  57 tatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||    
T  19357919 tatggaagatgatggaatttggagttcaagagtcttggactca 19357961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 660915 - 660866
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    ||||||||||||  ||||||||| ||| ||||| ||||||||||||||||    
T  660915 tttgttatatggcagatgaaggaatttcgagttgaagagtcttggactca 660866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 19344687 - 19344594
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||||||||||||||||||| ||| || | |||   ||| | ||||||||||||  ||||| ||| ||||||||| || | |||||||||||    
T  19344687 tgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactca 19344594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 19722020 - 19722069
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||| |||||| ||||| ||| |||||||||||||| |||||||||||    
T  19722020 tttgttttatggaagatgatggaatttggagttcaagattcttggactca 19722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 24010377 - 24010434
Alignment:
Q  42 gaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||||||||||| |||||   ||||||||||  || ||||||||||||||||||||    
T  24010377 gaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactca 24010434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 26230219 - 26230276
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 107  Q
    |||||| |||||  |||||| |||| ||||||||||||||||||| |||| |||||||    
T  26230219 tttgttttatggcagatgaaagagtatggagttcaagagtcttggtctcaattattta 26230276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 22080885 - 22080925
Alignment:
Q  65 atgaaggagtttggagttcaagagtcttggactcagttatt 105  Q
    |||||| | ||||||||||||||||||||||||| ||||||    
T  22080885 atgaagcaatttggagttcaagagtcttggactcggttatt 22080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 24035746 - 24035810
Alignment:
Q  43 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttattta 107  Q
    ||||||||| ||| |||||   ||||||||||  || |||||||||||||||||||| |||||||    
T  24035746 aactgaattggttttatggcaaatgaaggagtacggcgttcaagagtcttggactcaattattta 24035810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 36260248 - 36260300
Alignment:
Q  43 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 95  Q
    |||||| ||||||||||||| |||| | || ||||||||| ||||||||||||    
T  36260248 aactgattttgttatatggaagatggaagaatttggagttgaagagtcttgga 36260300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 11339520 - 11339400
Alignment:
Q  17 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 116  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||   ||||  ||||||||| ||||||| ||||||||||| |||||||||||||| |    
T  11339520 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaattatttagaattgact 11339421  T
Q  117 acgttaatcttaaaatacata 137  Q
    || |||||||| |||| ||||    
T  11339420 actttaatcttgaaatgcata 11339400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 11345202 - 11345082
Alignment:
Q  17 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 116  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||   ||| | ||||||||| ||||||| ||||||||||| |||||||||||||| |    
T  11345202 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaattatttagaattgact 11345103  T
Q  117 acgttaatcttaaaatacata 137  Q
    || |||||||| |||| ||||    
T  11345102 actttaatcttcaaatgcata 11345082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 11359080 - 11358964
Alignment:
Q  17 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 116  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||   ||||| ||| | ||| ||||||| ||||||||||| |||||||||||||| |    
T  11359080 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatgaaagagatgggatttcaagaatcttggactcaattatttagaattgact 11358981  T
Q  117 acgttaatcttaaaata 133  Q
    ||  ||||||| |||||    
T  11358980 actctaatcttgaaata 11358964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 11338677 - 11338567
Alignment:
Q  17 ctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaattgaat 116  Q
    ||||| ||||| || ||||| |||  |||||||||||||||||||   ||||| ||||||||| ||||||| |||||| |||| ||||||||| || | |    
T  11338677 ctttgcttttcacatgatttcaagcaaactgaatttgttatatggcaaatgaaagagtttggatttcaagaatcttggtctcaattatttagagttaact 11338578  T
Q  117 acgttaatctt 127  Q
    || ||||||||    
T  11338577 actttaatctt 11338567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 23840636 - 23840754
Alignment:
Q  9 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttag 108  Q
    ||||| ||||||| |||||||| ||||| |||  ||||||||||||||||||    | |||  ||||||| ||||| |||||||||||||| ||||||||    
T  23840636 tggaccgcctttgcttttcgcatgatttcaagaaaactgaatttgttatatgacaaaggaaatagtttggggttcaggagtcttggactcaattatttag 23840735  T
Q  109 aattgaatacgttaatctt 127  Q
    |||||| ||| ||||||||    
T  23840736 aattgactactttaatctt 23840754  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 23847286 - 23847168
Alignment:
Q  9 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttag 108  Q
    ||||| ||||||| |||||||| ||||| |||  |   |||||||||| ||||   ||||| |||||| | ||||||||||||| |||||||||||||||    
T  23847286 tggaccgcctttgcttttcgcatgatttcaagaaattagaatttgttacatggcaaatgaaagagtttagggttcaagagtcttagactcagttatttag 23847187  T
Q  109 aattgaatacgttaatctt 127  Q
    |||||| ||| ||||||||    
T  23847186 aattgactactttaatctt 23847168  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 8443571 - 8443460
Alignment:
Q  1 agttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcag 100  Q
    |||| |||||||||| |||||||||||  | ||||| ||| ||||| | | |||||| |||  ||||||||| ||||||||||| |||||||||| |||     
T  8443571 agttttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaa 8443472  T
Q  101 ttatttagaatt 112  Q
    ||||||| ||||    
T  8443471 ttatttaaaatt 8443460  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 10460583 - 10460684
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatt 105  Q
    |||||||||| |||||||| ||  | ||||||||||||||| | ||||| |||||   ||||||| | ||||||||||| ||||| |||||||| |||||    
T  10460583 tgatggactgtctttgtttctcttatgattttaagggaactcattttgtgatatgacagatgaagaattttggagttcacgagtcatggactcaattatt 10460682  T
Q  106 ta 107  Q
    ||    
T  10460683 ta 10460684  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 53774810 - 53774891
Alignment:
Q  18 tttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    ||||||||||  | |||||||| | |||| | ||||||||||||   |||||||| ||||||||| ||||||||||||||||    
T  53774810 tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactca 53774891  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 35766976 - 35767065
Alignment:
Q  6 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 95  Q
    |||||||||| ||||| |||||  | |||| || | ||||| | ||||||||||||| |||| | || ||||||||| ||||||||||||    
T  35766976 tgatggactgtctttgcttttctaatgattatatgtgaactcattttgttatatggaagatggaagaatttggagttgaagagtcttgga 35767065  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 25377076 - 25377138
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaatt 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||    
T  25377076 tttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaatt 25377138  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18908877 - 18908828
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  18908877 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18908828  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18913625 - 18913576
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  18913625 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18913576  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18920833 - 18920784
Alignment:
Q  50 tttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  18920833 tttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18920784  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 50645571 - 50645491
Alignment:
Q  32 gattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcagttatttagaatt 112  Q
    |||||| |||||||| | |||||||| |||   |||||||| |||||||||||||||||||||| ||| ||||||| ||||    
T  50645571 gattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaatt 50645491  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 39379136 - 39379080
Alignment:
Q  43 aactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactca 99  Q
    |||||| ||| ||||||||  ||||||||| ||||| ||| ||||||||||||||||    
T  39379136 aactgattttattatatggcagatgaaggaatttggggttgaagagtcttggactca 39379080  T

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Target: scaffold0267 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 13407 - 13444
Alignment:
Q  65 atgaaggagtttggagttcaagagtcttggactcagtt 102  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13407 atgaaagagtttggagttcaagagtcttggactcagtt 13444  T

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Target: scaffold0867 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 4722 - 4682
Alignment:
Q  65 atgaaggagtttggagttcaagagtcttggactcagttatt 105  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  4722 atgaagaaatttggagttcaagagtcttggactcagttatt 4682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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