View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_42 (Length: 291)
Name: NF20437_low_42
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 36800611 - 36800462
Alignment:
| Q |
18 |
catgaagcttacgaaagagtttactactactacttaaaaaacaagagtaagagacaaagtttttaggttgnnnnnnngttatatatatatggcttccagt |
117 |
Q |
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| T |
36800611 |
catgaagcttacgaaagagtttactactactacttaaaaaacaagagtaagagacaaagtttttaggttgtttttttgttatatatatatggcttccagt |
36800512 |
T |
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| Q |
118 |
gttgaaaaaccaaaccaaaccactactcaactagaaccactcccaccacc |
167 |
Q |
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| T |
36800511 |
gttgaaaaaccaaaccaaaccactactcaactagaaccactcccaccacc |
36800462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 36800394 - 36800350
Alignment:
| Q |
235 |
atttcttttggaatgatgcaatcttcttcatcaccctctgtcctt |
279 |
Q |
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| T |
36800394 |
atttcttttggaatgatgcaatcttcttcatcaccctctgtcctt |
36800350 |
T |
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