View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_45 (Length: 280)
Name: NF20437_low_45
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 31053462 - 31053709
Alignment:
| Q |
22 |
acctctactatgtttgtgctaccaactgatgcgtactcaaaagaaacttaattatattgtattgttatgtatgttgtttgactcgtttgtgtatatgata |
121 |
Q |
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| T |
31053462 |
acctctactatgtttgtgctaccaactgatgcgtactcaaaagaaacttaattatattgtattgttatgtatgttgtttgactcgtttgtatatatgata |
31053561 |
T |
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| Q |
122 |
tgcatgtttgcatcttagaagaagaagacgatttagagaagcttctactccctgatgttcagaatcttcccctcattcctccttctgccgttgaaaccaa |
221 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053562 |
tgcatgtttgtatcttagaagaagaggacgatttagagaagcttctactccctgatgttcagaatcttcccctcattcctccttctgccgttgaaaccaa |
31053661 |
T |
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| Q |
222 |
tttcgtcacttatttcgctctaggtaactcaattcactcattattcat |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053662 |
tttcgtcacttatttcgctctaggtaactcaattcactcattattcat |
31053709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 141 - 269
Target Start/End: Complemental strand, 53452256 - 53452128
Alignment:
| Q |
141 |
agaagaagacgatttagagaagcttctactccctgatgttcagaatcttcccctcattcctccttctgccgttgaaaccaatttcgtcacttatttcgct |
240 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53452256 |
agaagaagatgatttagagaagcttctactccctgatgttgagaattttcccctcattcctccttctgccattgaaaccaatttcgtcacttatttcgct |
53452157 |
T |
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| Q |
241 |
ctaggtaactcaattcactcattattcat |
269 |
Q |
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|||||||||||||||||||| |||||||| |
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| T |
53452156 |
ctaggtaactcaattcactctttattcat |
53452128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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