View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20437_low_49 (Length: 250)
Name: NF20437_low_49
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 43314879 - 43315101
Alignment:
| Q |
13 |
aatatattttagatcggttgatcatgatcggttacaatgtcttgttgtaacgttagggaatccaaatctaaatgttagagtgagtgttgaataatgttct |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43314879 |
aatatattttagatcgattgatcatgatcggttacaatgtcttgttgtaacgttaggaaatccaaatctaaatgttagagtgagtgttgaataatgttct |
43314978 |
T |
|
| Q |
113 |
aaacacttatctttacatgttttacgatctttaacaccaattaaattgctcaacaaaaacactaattagatagacacatttcgacaatgactaacattaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43314979 |
aaacacttatctttacatgttttacgatctttaacaccaattaaattgctcaacaaaaacactaattagatacacacatttcgacaatgactaacattaa |
43315078 |
T |
|
| Q |
213 |
atatgtcaaacaaacataggatc |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43315079 |
atatgtcaaacaaacataggatc |
43315101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 43330220 - 43330380
Alignment:
| Q |
78 |
atctaaatgttagagtgagtgttgaa----taatgttctaaacacttatctttacatgttttacgatctttaacaccaattaaattgctcaacaa----- |
168 |
Q |
| |
|
||||||||||| |||||||||||| | |||| |||| ||||| | |||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
43330220 |
atctaaatgtttgagtgagtgttggagagataatattcttaacacccagctttgcatgttttacgatctt-aacgccaattaaattgctcaacaagaaga |
43330318 |
T |
|
| Q |
169 |
-aaacactaattagatagacacatttcgacaatgactaacattaaatatgtcaaacaaacatag |
231 |
Q |
| |
|
||| |||||| |||| ||||||||||||| |||| |||| |||||||||||| |||||||| |
|
|
| T |
43330319 |
ttaactctaattggatacacacatttcgaca--gactgacatgaaatatgtcaaataaacatag |
43330380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 43321035 - 43321128
Alignment:
| Q |
78 |
atctaaatgttagagtgagtgttg----aataatgttctaaacacttatctttacatgttttacgatctttaacaccaattaaattgctcaacaa |
168 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||| |||||| |||||| |||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
43321035 |
atctaaatgttaaagtgagtgttggagagataatattcttaacactcatctttgcatgttttacgatc-ataacatcaattaaattactcaacaa |
43321128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University