View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20437_low_5 (Length: 618)

Name: NF20437_low_5
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20437_low_5
NF20437_low_5
[»] chr8 (25 HSPs)
chr8 (18-608)||(6352312-6352905)
chr8 (18-301)||(6424336-6424601)
chr8 (486-605)||(7459150-7459269)
chr8 (487-609)||(6363250-6363372)
chr8 (183-298)||(7459418-7459533)
chr8 (183-296)||(6363421-6363534)
chr8 (18-100)||(6363628-6363710)
chr8 (509-606)||(6424158-6424255)
chr8 (498-606)||(6370115-6370223)
chr8 (509-608)||(6274575-6274674)
chr8 (509-608)||(6331959-6332058)
chr8 (182-299)||(6370314-6370431)
chr8 (183-303)||(6332158-6332278)
chr8 (159-253)||(6274828-6274922)
chr8 (183-300)||(6289273-6289390)
chr8 (17-66)||(6332470-6332519)
chr8 (18-68)||(6391469-6391519)
chr8 (183-303)||(6321656-6321773)
chr8 (17-58)||(6321904-6321945)
chr8 (18-70)||(7459642-7459694)
chr8 (17-66)||(6275027-6275076)
chr8 (17-66)||(6289514-6289563)
chr8 (557-605)||(6410251-6410299)
chr8 (509-595)||(6321467-6321553)
chr8 (507-583)||(6288852-6288928)


Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Complemental strand, 6352905 - 6352312
Alignment:
Q  18 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgttac------acaaaaataa 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||   ||||||||||||||||||       | ||||||||    
T  6352905 gaatttgcaagggagatgattgctggggtgaacccacacatcatcaaaaaactttcggtaaagctaatagtttaactttgttaagaaattaaaaaaataa 6352806  T
Q  112 aactaagactaatttgtaaacattatgttatttttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagat 211  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||||    
T  6352805 aactaagactattttgtaaacattatgttatttttgtaattggtgacattattgcttgctaaatttaatacaggagtttccaccaaagagcaagctagat 6352706  T
Q  212 agccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgacatatttgatta 311  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |    
T  6352705 agccaaaaatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaatgacatatttgatca 6352606  T
Q  312 gttctattattctttttccaaagtggcgttcgtgaaattcgtccgggagaaaatttgaaatctgtccctctaggttataaggtcgactttaaccactggg 411  Q
    ||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  6352605 gttctatt----tttttccaaagtggcgttcgtgaatttcgtccgggagaaaatttgaaatctatcccttgaggttataaggtcgactttaaccactggg 6352510  T
Q  412 ttgacacctcatggacttggttcaattaata-ttttctccatgattgaannnnnnnnattcaagtaaaccaccgaagctaaatttaattttgtcatacag 510  Q
    |||||||||||||||||| |||  ||||||| |||||||||||||||||        ||||||||||||||| | |||||||||| ||||||||||||||    
T  6352509 ttgacacctcatggacttagtttgattaatatttttctccatgattgaattttttttattcaagtaaaccacagtagctaaattttattttgtcatacag 6352410  T
Q  511 gctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgctac 608  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6352409 gctatccaagacaatagattgtacatacttgatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagacaaaggcctatgctac 6352312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 6424601 - 6424336
Alignment:
Q  18 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgttacacaaaaataaaactaa 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||| | ||||||                     
T  6424601 gaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattgtta----------------- 6424519  T
Q  118 gactaatttgtaaacattatgttatttttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaa 217  Q
     |||| |||||||||| |||||||||| |||||||||| |||||||||||||  ||  |||||||||||||| ||||  | |||||||||||||||||||    
T  6424518 -actattttgtaaacaatatgttatttctataattggtaacattattgcttgaaacaattaattcaggagttcccacataagagcaagctagatagccaa 6424420  T
Q  218 atatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgaca 301  Q
    | || ||| ||||| ||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||    
T  6424419 aaatatggagataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgaca 6424336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 486 - 605
Target Start/End: Complemental strand, 7459269 - 7459150
Alignment:
Q  486 agctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgca 585  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |  ||  ||||||||||||||| ||||||||||    
T  7459269 agctaaattttattttgtcatacaggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgca 7459170  T
Q  586 actgagacaaaggcctatgc 605  Q
    |||||||||||| |||||||    
T  7459169 actgagacaaagtcctatgc 7459150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 487 - 609
Target Start/End: Complemental strand, 6363372 - 6363250
Alignment:
Q  487 gctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaa 586  Q
    ||||||||| |||||||   |||||||||||| || |||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  6363372 gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa 6363273  T
Q  587 ctgagacaaaggcctatgctact 609  Q
    | ||||| |||||||||||||||    
T  6363272 ccgagactaaggcctatgctact 6363250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 183 - 298
Target Start/End: Complemental strand, 7459533 - 7459418
Alignment:
Q  183 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 282  Q
    ||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||||| |||||||  ||  ||||||||||||||||||| ||||||||    
T  7459533 aggagtttccaccaaagagcaagttagatagcaaactatatggtgataataccagcacaataaccattgatcacttggagccaaacatgggaggggtcac 7459434  T
Q  283 tgtagaacaggtaatg 298  Q
     |||||||||||||||    
T  7459433 agtagaacaggtaatg 7459418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 6363534 - 6363421
Alignment:
Q  183 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 282  Q
    ||||||||||||||| ||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| | ||| ||||||||||||  ||||||||    
T  6363534 aggagtttccaccaaagagcaagttagatacccaactctttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcac 6363435  T
Q  283 tgtagaacaggtaa 296  Q
     |||||||||||||    
T  6363434 ggtagaacaggtaa 6363421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 6363710 - 6363628
Alignment:
Q  18 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||| ||||||| ||||||    
T  6363710 gaatttgcaagggagatgattgctggggtgaatccacacatcataaaaaaactcttggtaaagttaatggtttaacattgtta 6363628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 509 - 606
Target Start/End: Complemental strand, 6424255 - 6424158
Alignment:
Q  509 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgct 606  Q
    |||||||||||||||| | ||||||||| || |||||| | |||    | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6424255 aggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgct 6424158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 606
Target Start/End: Complemental strand, 6370223 - 6370115
Alignment:
Q  498 ttttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaag 597  Q
    |||||||  |||||||||| || ||||||||||||||||||| |||||||||||  |  ||| |||||||||||||||| |||||| ||||||  |||||    
T  6370223 ttttgtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaag 6370124  T
Q  598 gcctatgct 606  Q
     ||||||||    
T  6370123 acctatgct 6370115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 509 - 608
Target Start/End: Complemental strand, 6274674 - 6274575
Alignment:
Q  509 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgctac 608  Q
    |||||||||||| ||| | |||||||||||| ||| |||||||| || | | ||||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  6274674 aggctatccaaaccaacaaattgtacatacttgattaccacgactcgttatatccatatctgaggaaaataaatgcagctgatacaaaggcatatgctac 6274575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 509 - 608
Target Start/End: Complemental strand, 6332058 - 6331959
Alignment:
Q  509 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgctac 608  Q
    |||||||||||||||| ||  | |||||||| |||||||| |||||  | |||||||||||||||||||||||  ||||||| |||||||| ||||||||    
T  6332058 aggctatccaaaacaacaggctttacatacttgatcaccatgacccaatatttccatatttgaggaaaataaactcaactgatacaaaggcatatgctac 6331959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 6370431 - 6370314
Alignment:
Q  182 caggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtca 281  Q
    |||||| |||||  || ||||||| |||||||  || | | |||||||||||||||||| |||||||||||| |||||||||||||||||   |||||||    
T  6370431 caggagcttccaagaaagagcaagttagatagtaaactctatggtgataataccagcacaataaccaaagaacacttggagccaaacatgaatggggtca 6370332  T
Q  282 ctgtagaacaggtaatga 299  Q
    | ||| || |||||||||    
T  6370331 cagtaaaagaggtaatga 6370314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 303
Target Start/End: Complemental strand, 6332278 - 6332158
Alignment:
Q  183 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 282  Q
    ||||||| ||||||| |||||||||||||| |||| | |  ||||||||||| ||||| |||||| ||||| | ||  ||| ||||||||  ||||||||    
T  6332278 aggagttcccaccaaagagcaagctagatacccaactctacggtgataatacgagcacaataaccgaagaacagttacagctaaacatggatggggtcac 6332179  T
Q  283 tgtagaacaggtaatgacata 303  Q
    ||||||| | |||||||||||    
T  6332178 tgtagaagaagtaatgacata 6332158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 6274922 - 6274828
Alignment:
Q  159 attattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaa 253  Q
    ||||||||||| ||  ||||||  |||| |||||||||| ||||||||||||||| ||| | |  ||||||||||||||||| ||||||||||||    
T  6274922 attattgcttgatatatttaatgtaggaatttccaccaaagagcaagctagataggcaactctacggtgataataccagcacaataaccaaagaa 6274828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 6289390 - 6289273
Alignment:
Q  183 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 282  Q
    ||||||| ||||||| |||||||||| ||||||||   |  ||||||||||| ||||| |||||||||||| | ||| ||| ||| ||||  ||||||||    
T  6289390 aggagttcccaccaaagagcaagctaaatagccaagactacggtgataatacgagcacaataaccaaagaacagttgcagctaaatatggatggggtcac 6289291  T
Q  283 tgtagaacaggtaatgac 300  Q
    ||||||| | ||||||||    
T  6289290 tgtagaagaagtaatgac 6289273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 6332519 - 6332470
Alignment:
Q  17 agaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaa 66  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  6332519 agaatttgcaagggagatgattgctggtgtgaatccacacataatcaaaa 6332470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 6391519 - 6391469
Alignment:
Q  18 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaa 68  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||||||    
T  6391519 gaatttgcaagggagatgattgctggtgtgaatccaaacgtcatcaaaaaa 6391469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 303
Target Start/End: Complemental strand, 6321773 - 6321656
Alignment:
Q  183 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 282  Q
    ||||||| ||||||| |||||||||| ||| || | |||  ||||||||||| ||||| |||||| ||||| | || |||| ||||||||  ||||||||    
T  6321773 aggagttcccaccaaagagcaagctaaata-ccgattat--ggtgataatacgagcacaataaccgaagaacagttagagctaaacatggatggggtcac 6321677  T
Q  283 tgtagaacaggtaatgacata 303  Q
    ||||||| | |||||||||||    
T  6321676 tgtagaagaagtaatgacata 6321656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 6321945 - 6321904
Alignment:
Q  17 agaatttgcaagggagatgattgctggggtgaatccacacat 58  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  6321945 agaatttgcaagggagatgattgctggtgtgaatccacacat 6321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 7459694 - 7459642
Alignment:
Q  18 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaact 70  Q
    ||||| |||||| |||||||||||||||||||||| || ||||||||||||||    
T  7459694 gaattcgcaaggcagatgattgctggggtgaatcctcatatcatcaaaaaact 7459642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 6275076 - 6275027
Alignment:
Q  17 agaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaa 66  Q
    ||||||| |||| |||||||||||||| || |||||||||||||||||||    
T  6275076 agaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaa 6275027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 6289563 - 6289514
Alignment:
Q  17 agaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaa 66  Q
    ||||||| |||| |||||||||||||| |||||||||||||| |||||||    
T  6289563 agaatttacaagagagatgattgctggtgtgaatccacacattatcaaaa 6289514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 605
Target Start/End: Complemental strand, 6410299 - 6410251
Alignment:
Q  557 tctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgc 605  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||    
T  6410299 tcttaccatatttgaggaaaataaatgcaactggcgcaaaggcctatgc 6410251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 595
Target Start/End: Complemental strand, 6321553 - 6321467
Alignment:
Q  509 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaa 595  Q
    |||||||||||||||| ||  | |||||||| |||||||| ||| |  | | ||||||| ||||||||||||||||| |||| ||||    
T  6321553 aggctatccaaaacaacaggctttacatacttgatcaccatgactcaatatatccatatctgaggaaaataaatgcagctgatacaa 6321467  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 583
Target Start/End: Complemental strand, 6288928 - 6288852
Alignment:
Q  507 acaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatg 583  Q
    |||||||||||| ||||| ||| | |||||||| ||| |||| ||| |  | |||||||||||||| ||||||||||    
T  6288928 acaggctatccataacaagagactttacatacttgattaccaagactcaatatttccatatttgagcaaaataaatg 6288852  T

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