View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20437_low_50 (Length: 250)

Name: NF20437_low_50
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20437_low_50
NF20437_low_50
[»] chr4 (4 HSPs)
chr4 (16-231)||(1481099-1481316)
chr4 (142-249)||(42327821-42327928)
chr4 (86-143)||(1480314-1480370)
chr4 (194-243)||(32499607-32499656)
[»] chr8 (4 HSPs)
chr8 (143-249)||(34752609-34752715)
chr8 (142-249)||(9180649-9180756)
chr8 (142-249)||(11629555-11629662)
chr8 (144-200)||(898766-898822)
[»] chr6 (1 HSPs)
chr6 (142-249)||(10158873-10158980)
[»] chr2 (2 HSPs)
chr2 (142-249)||(10748105-10748212)
chr2 (162-249)||(14786062-14786148)
[»] chr1 (2 HSPs)
chr1 (142-249)||(39501180-39501287)
chr1 (141-250)||(50182891-50182999)
[»] chr3 (2 HSPs)
chr3 (152-250)||(31574903-31575001)
chr3 (168-243)||(2497052-2497127)
[»] chr7 (3 HSPs)
chr7 (149-248)||(30305258-30305357)
chr7 (168-243)||(12350681-12350756)
chr7 (194-243)||(41147815-41147864)
[»] chr5 (3 HSPs)
chr5 (142-189)||(26600945-26600992)
chr5 (194-243)||(23151330-23151379)
chr5 (144-224)||(34893741-34893821)
[»] scaffold0067 (1 HSPs)
scaffold0067 (194-243)||(10955-11004)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 1481316 - 1481099
Alignment:
Q  16 ataagatatgataagaattattgattttctagtgaaaaataaacttatgtattgtacaaaactatttgctaatattctttatattgattttctacttcca 115  Q
    |||||||||||||||||||||||||||  |||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  1481316 ataagatatgataagaattattgatttagtagttaaaaataaacttatgt-tggtacaaaactatttgctaatattctttatattgattttctacttcca 1481218  T
Q  116 ttgtacttcatacaaaactatttaacttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggcc---ttacat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||   ||||||    
T  1481217 ttgtacttcatacaaaactatttaacttttttcttttagcaaagacaaagttaattcatttcattaaaaattaacagatagaaagtcggccttattacat 1481118  T
Q  213 gatgaaagatatgggggct 231  Q
    |||||||||||||||||||    
T  1481117 gatgaaagatatgggggct 1481099  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 42327821 - 42327928
Alignment:
Q  142 ttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagat 241  Q
    |||||| || |||||||| |||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  42327821 tttttttttgtagcaaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagat 42327920  T
Q  242 agtgatgc 249  Q
    ||||||||    
T  42327921 agtgatgc 42327928  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 1480370 - 1480314
Alignment:
Q  86 aatattctttatattgattttctacttccattgtacttcatacaaaactatttaactt 143  Q
    |||| |||||||||||| ||||||||| ||||||| |||||||| |||||||| ||||    
T  1480370 aatactctttatattga-tttctactttcattgtatttcatacataactattttactt 1480314  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 32499656 - 32499607
Alignment:
Q  194 tacaaagtaggccttacatgatgaaagatatgggggctatggtgagatag 243  Q
    ||||||||||||  |||||||||||| |||||||||||| | ||||||||    
T  32499656 tacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatag 32499607  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 34752609 - 34752715
Alignment:
Q  143 tttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagata 242  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  34752609 ttttttttttagcaaaggcaaagttaattcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagata 34752708  T
Q  243 gtgatgc 249  Q
    |||||||    
T  34752709 gtgatgc 34752715  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 9180649 - 9180756
Alignment:
Q  142 ttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagat 241  Q
    |||||| ||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  9180649 ttttttttttgagcaaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagat 9180748  T
Q  242 agtgatgc 249  Q
    ||||||||    
T  9180749 agtgatgc 9180756  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 11629662 - 11629555
Alignment:
Q  142 ttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagat 241  Q
    |||||| ||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||| ||| ||||||||    
T  11629662 ttttttttttgagcaaatgcaaagttaattcatttcattaaaaattaacggatacaaagtaggtgctacatgatgaaagatatggggcctagggtgagat 11629563  T
Q  242 agtgatgc 249  Q
    | ||||||    
T  11629562 aatgatgc 11629555  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 898766 - 898822
Alignment:
Q  144 ttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaag 200  Q
    |||| ||||||||||  |||||||||||||||| ||| ||||||| | |||||||||    
T  898766 tttttttttagcaaaagcaaagttaattcatttcatttaaaattagccgatacaaag 898822  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 10158873 - 10158980
Alignment:
Q  142 ttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagat 241  Q
    |||||| ||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  10158873 ttttttttttgagcaaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagat 10158972  T
Q  242 agtgatgc 249  Q
    ||||||||    
T  10158973 agtgatgc 10158980  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 10748212 - 10748105
Alignment:
Q  142 ttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagat 241  Q
    |||||| ||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||||||||    
T  10748212 ttttttttttgagcaaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgagggctagggtgagat 10748113  T
Q  242 agtgatgc 249  Q
    ||||||||    
T  10748112 agtgatgc 10748105  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 14786148 - 14786062
Alignment:
Q  162 aaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagatagtgatgc 249  Q
    ||||||| ||||||| ||| |||||||| | |||||||||| || ||| ||||||||| ||| ||||| || | ||||||||||||||    
T  14786148 aaagttacttcatttcattcaaaattaaggaatacaaagtaagcatta-atgatgaaaaataagggggttaagatgagatagtgatgc 14786062  T

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Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 39501287 - 39501180
Alignment:
Q  142 ttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagat 241  Q
    |||||| |||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||| ||||| ||||||||    
T  39501287 tttttttttttagcaaagacagaattaattcatttcattaaaaactaacggatacaaagtaggtgttacatgatgaaagatatggaggctagggtgagat 39501188  T
Q  242 agtgatgc 249  Q
    ||||||||    
T  39501187 agtgatgc 39501180  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 50182999 - 50182891
Alignment:
Q  141 cttttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgaga 240  Q
    ||||||| ||||||||||| |||||||| ||||||| ||| |||||||| | ||||||||||||| ||||||||||||| |||| ||||||| | | |||    
T  50182999 ctttttttttttagcaaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgatgaaaaatat-ggggctaggattaga 50182901  T
Q  241 tagtgatgcc 250  Q
    ||||||||||    
T  50182900 tagtgatgcc 50182891  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 31575001 - 31574903
Alignment:
Q  152 tagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagatagtgatgcc 250  Q
    |||||||  |||||||| ||||||| ||| |||||||| | |||| |||||||| ||||||||||||| |||||| ||||| | | |||||||||||||    
T  31575001 tagcaaaagcaaagttacttcatttcattcaaaattaaggaatactaagtaggcattacatgatgaaaaatatggcggctaggattagatagtgatgcc 31574903  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 2497052 - 2497127
Alignment:
Q  168 aattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagatag 243  Q
    ||||||||| ||| | ||||||  | ||||||||||||  |||||||||||| |||||||||||| | ||||||||    
T  2497052 aattcatttcattcataattaagcggtacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatag 2497127  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 30305258 - 30305357
Alignment:
Q  149 ttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagatagtgatg 248  Q
    ||||||||||| | |||||| ||| ||| ||  ||||| |||||||||||||||| |  ||||||| |||| |||||||| ||| |||||||||||||||    
T  30305258 ttttagcaaaggcgaagttagttcctttcatacaaaatcaacggatacaaagtagacgatacatgacgaaaaatatggggtctagggtgagatagtgatg 30305357  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 12350681 - 12350756
Alignment:
Q  168 aattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatatgggggctatggtgagatag 243  Q
    ||||||||| ||| ||||||||  | ||||||||||||  |||||||||||| ||||||||| || | ||||||||    
T  12350681 aattcatttcattcaaaattaaatggtacaaagtaggcaatacatgatgaaaaatatgggggataggatgagatag 12350756  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 41147864 - 41147815
Alignment:
Q  194 tacaaagtaggccttacatgatgaaagatatgggggctatggtgagatag 243  Q
    ||||||||||||  |||||||||||| |||||||||||| | ||||||||    
T  41147864 tacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatag 41147815  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 26600945 - 26600992
Alignment:
Q  142 ttttttcttttagcaaagacaaagttaattcattttattaaaaattaa 189  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26600945 tttttttttttagcaaagacaaagttaattcatttcattaaaaattaa 26600992  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 23151379 - 23151330
Alignment:
Q  194 tacaaagtaggccttacatgatgaaagatatgggggctatggtgagatag 243  Q
    ||||||||||||  |||||||||||| |||||||||||| | ||||||||    
T  23151379 tacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatag 23151330  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 34893741 - 34893821
Alignment:
Q  144 ttttcttttagcaaagacaaagttaattcattttattaaaaattaacggatacaaagtaggccttacatgatgaaagatat 224  Q
    |||| ||| ||||||| || ||| ||||||||| ||| ||||||||  | ||||||||||||  |||||||||||| ||||    
T  34893741 ttttttttgagcaaaggcagagtcaattcatttcattcaaaattaattggtacaaagtaggcaatacatgatgaaaaatat 34893821  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 10955 - 11004
Alignment:
Q  194 tacaaagtaggccttacatgatgaaagatatgggggctatggtgagatag 243  Q
    ||||||||||||  |||||||||||| |||||||||||| | ||||||||    
T  10955 tacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatag 11004  T

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