View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_54 (Length: 242)
Name: NF20437_low_54
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 33883963 - 33884177
Alignment:
| Q |
14 |
atatcgatcggttggccagtctgcagttccttagccttggagcaaacaacttttcaggtgatattccaatgagtattggtaagttgaggaatttgaaaag |
113 |
Q |
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| T |
33883963 |
atatcgatcggttggccagtctgcagttccttagccttggagcaaacaacttttcaggtgatattccaatgagtattggtaagttgaggaatttgaaaag |
33884062 |
T |
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| Q |
114 |
tcttcgactttatgaatgtcttttcaatggtagtattgctaatgaaattggtgatttgttaaatctcgaaacactgtcaatgttctcaaatagtatgcta |
213 |
Q |
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| T |
33884063 |
tcttcgactttatgaatgtcttttcaatggtagtattgctaatgaaattggtgatttgttaaatctcgaaacactgtcaatgttctcaaatagtatgcta |
33884162 |
T |
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| Q |
214 |
cctaggacaaagttg |
228 |
Q |
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||||||||||||||| |
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| T |
33884163 |
cctaggacaaagttg |
33884177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 33915035 - 33915249
Alignment:
| Q |
14 |
atatcgatcggttggccagtctgcagttccttagccttggagcaaacaacttttcaggtgatattccaatgagtattggtaagttgaggaatttgaaaag |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
33915035 |
atatcgatcggttggccagtctgcagtttcttagccttggagcaaacaacttttcaggtgatattccaatgagtattggtaagttgaagaatttaaaaag |
33915134 |
T |
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| Q |
114 |
tcttcgactttatgaatgtcttttcaatggtagtattgctaatgaaattggtgatttgttaaatctcgaaacactgtcaatgttctcaaatagtatgcta |
213 |
Q |
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| T |
33915135 |
tcttcaaatttatcaatgtcttgttaatggtactattgctgatgaaattggtgatttggtcaatcttgaaactttgttattgttctcaaatcatatgtta |
33915234 |
T |
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| Q |
214 |
cctaggacaaagttg |
228 |
Q |
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||||||||||||||| |
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| T |
33915235 |
cctaggacaaagttg |
33915249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 33897508 - 33897302
Alignment:
| Q |
22 |
cggttggccagtctgcagttccttagccttggagcaaacaacttttcaggtgatattccaatgagtattggtaagttgaggaatttgaaaagtcttcgac |
121 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |
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| T |
33897508 |
cggttggcccatctgcagttccttagccttggagcaaacaacttttcaggtgatattccaatgagtattggtaagttgaaaaatttaaaaagtcttcaac |
33897409 |
T |
|
| Q |
122 |
tttatgaatgtcttttcaatggtagtattgctaatgaaattggtgatttgttaaatctcgaaacactgtcaatgttctcaaatagtatgctacctaggac |
221 |
Q |
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| T |
33897408 |
tttatctatgtaatttcaatggtagtattgcaaatgaaattggtgatttgttcaatcttgaaacattgttattgttctcaaatcatatgttacctaggac |
33897309 |
T |
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| Q |
222 |
aaagttg |
228 |
Q |
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||||||| |
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| T |
33897308 |
aaagttg |
33897302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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