View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_55 (Length: 239)
Name: NF20437_low_55
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_55 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36351821 - 36352058
Alignment:
| Q |
1 |
cgacaatttgacacagccaataagattgttatcaacatttttgtcttcttccatgcaacgggaaacgtactactgttccttctgctacatctatagcagt |
100 |
Q |
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| T |
36351821 |
cgacaatttgagacagccaataagattgttatcaacatttttgtcttcttccatgcaacgg-aaacgtactactgttccttctgctacatctatagcagt |
36351919 |
T |
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| Q |
101 |
gtctgcccgaacctatttggacggctgtgattttatcacattcagacagaaaagactgaaaacaaaataaaatattattttaatattttactaataagtt |
200 |
Q |
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| T |
36351920 |
gtctgcccgaacctatttggacggctgtgattttatcacattcagaaagaaaagactgaaaacaaaataaaatattattttaatattttactaataagtt |
36352019 |
T |
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| Q |
201 |
tggtnnnnnnncaaggtacgtaataaagtggatttgaga |
239 |
Q |
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| T |
36352020 |
tggtaaaaaaacaaggtaggtaataaattgtatttgaga |
36352058 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 37967649 - 37967715
Alignment:
| Q |
39 |
ttttgtcttcttccatgcaacgggaaacgtactactgttccttctgctacatctatagcagtgtctg |
105 |
Q |
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| T |
37967649 |
ttttgtgtttttccatgcaacgggaaacgtactactgttccttctgctgcatctacagcagtgtctg |
37967715 |
T |
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