View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_60 (Length: 226)
Name: NF20437_low_60
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 1315592 - 1315784
Alignment:
| Q |
14 |
cataggtgaagtgagttccaagaaagtttggtagtagaatggtgttggaaaatgaagttggtcaagtatcttgagttgttgtgtggggatagtgcaagtg |
113 |
Q |
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| T |
1315592 |
cataggtgaagtgagttc-aagaaagtttggtagtagaatggtgttggaaaatgaagttggtcaagtatcttgagttgttgtgtgggaatagtgcaagtg |
1315690 |
T |
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| Q |
114 |
agtaatgtaaatccaaagaatcctcttgggtgtgatgtaggtgaataatgtggctcaaatttaggaagacttgttgcgaggcaggtacgatatg |
207 |
Q |
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| T |
1315691 |
agtaatgtaaatccaaagaatcctcttgggtgtgatataggtgaataatgtggctcaagtttaggaagacttgttgcgaggcaggtacgatatg |
1315784 |
T |
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