View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_62 (Length: 220)
Name: NF20437_low_62
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 5170452 - 5170265
Alignment:
| Q |
15 |
caaagggcaacgggaaatgagatactcaattgcttgttcatctcccaaagggatgcgccaaaaatacaattttctcgacgagaaaaacttaattgaatga |
114 |
Q |
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| T |
5170452 |
caaagggcaacgggaaatgagatactcaattgcttgttcatctcccaaagggatgcgccaaaaatacaattttctcaacgagaaaaacttaattgaatga |
5170353 |
T |
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| Q |
115 |
ttcatgaatgcttgatcaactctaattccccccaccaacactaacttggtaagcgatttgacttcaattacaccgtttggtaatacat |
202 |
Q |
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| T |
5170352 |
ttcatgaatgcttgatcaactctaattccccccaccaacactaacttggtaagcaatttgacttcaattacaccgtttggtaatacat |
5170265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 5203696 - 5203586
Alignment:
| Q |
92 |
acgagaaaaacttaattgaatgattcatgaatgcttgatcaactctaattccccccaccaacactaacttggtaagcgatttgacttcaattacaccgtt |
191 |
Q |
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|||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| || |
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| T |
5203696 |
acgagaaaaatttaattgaatgattcatgaacgcagtatcaactctaattccccccatcaacaccaactcagtaagcgatttgacttcaattacaccatt |
5203597 |
T |
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| Q |
192 |
tggtaatacat |
202 |
Q |
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||||| |||| |
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| T |
5203596 |
cggtaagacat |
5203586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 5193456 - 5193354
Alignment:
| Q |
94 |
gagaaaaacttaattgaatgattcatgaatgcttgatcaactctaattccccccaccaacactaacttggtaagcgatttgacttcaattacaccgtttg |
193 |
Q |
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| T |
5193456 |
gagaaaaatttaattgaatgattcatgaatgctgtatcaactccgattcccggcatcaacactaactcagtaagcgatttgacttcaattacaccttttg |
5193357 |
T |
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| Q |
194 |
gta |
196 |
Q |
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||| |
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| T |
5193356 |
gta |
5193354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 5174545 - 5174491
Alignment:
| Q |
94 |
gagaaaaacttaattgaatgattcatgaatgcttgatcaactctaattcccccca |
148 |
Q |
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|||||| |||||||||||| ||||||||||| |||||||||||| |||||||||| |
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| T |
5174545 |
gagaaacacttaattgaattattcatgaatgattgatcaactctgattcccccca |
5174491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 6230132 - 6230078
Alignment:
| Q |
94 |
gagaaaaacttaattgaatgattcatgaatgcttgatcaactctaattcccccca |
148 |
Q |
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|||||||| ||||||||| |||||||||||||| ||||||||| |||||||||| |
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| T |
6230132 |
gagaaaaatttaattgaacgattcatgaatgctgtatcaactcttattcccccca |
6230078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 49610615 - 49610505
Alignment:
| Q |
92 |
acgagaaaaacttaattgaatgattcatgaatgcttgatcaactctaattccccccaccaacactaacttggtaagcgatttgacttcaattacaccgtt |
191 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||| ||| |||||||||| ||| || ||||||||||| ||||| ||||||||||||| | |
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| T |
49610615 |
acgaaaaaaacttaattgactgatgcatgaatgcttgatcaattctgattccccccatcaataccaacttggtaagtgattttgcttcaattacacccat |
49610516 |
T |
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| Q |
192 |
tggtaatacat |
202 |
Q |
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|||||||||| |
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| T |
49610515 |
cggtaatacat |
49610505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 5177104 - 5177010
Alignment:
| Q |
94 |
gagaaaaacttaattgaatgattcatgaatgcttgatcaactctaattccccccaccaacactaacttggtaagcgatttgacttcaattacacc |
188 |
Q |
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|||||||| |||||||||||||||||||||| | ||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||| |
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| T |
5177104 |
gagaaaaatttaattgaatgattcatgaatgatgtatcaactttgattccccccatcaacactaactcagtaatggatttgacttcaattacacc |
5177010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 8553056 - 8553216
Alignment:
| Q |
28 |
gaaatgagatactcaattgcttgttcatctcccaaagggatgcgccaaaaatacaattttctcgacgagaaaaacttaattgaatgattcatgaatgctt |
127 |
Q |
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|||||||||| ||||||||| ||||||||| ||||| | | ||| || ||||| |||| | || |||||||||||||| |||||||||||||||| |
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| T |
8553056 |
gaaatgagatgctcaattgcatgttcatcttccaaaagaacaatccacaatgacaatactctcaatgaaaaaaacttaattgactgattcatgaatgctt |
8553155 |
T |
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| Q |
128 |
gatcaactctaattccccccaccaacactaacttggtaagcgatttgacttcaattacacc |
188 |
Q |
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||||||||||||| || ||| |||||| | ||||||||| ||||| |||| |||||||| |
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| T |
8553156 |
gatcaactctaatcccgcccttcaacaccaccttggtaagtgattttgcttcgattacacc |
8553216 |
T |
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