View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20437_low_65 (Length: 216)

Name: NF20437_low_65
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20437_low_65
NF20437_low_65
[»] chr8 (24 HSPs)
chr8 (54-199)||(20096752-20096898)
chr8 (1-48)||(6471059-6471106)
chr8 (1-50)||(18809490-18809539)
chr8 (1-49)||(8350879-8350927)
chr8 (1-49)||(43066340-43066388)
chr8 (1-49)||(45082026-45082074)
chr8 (1-48)||(2986539-2986586)
chr8 (1-48)||(3293101-3293148)
chr8 (1-48)||(14522593-14522640)
chr8 (1-48)||(23249066-23249113)
chr8 (1-48)||(30290138-30290185)
chr8 (8-49)||(2805475-2805516)
chr8 (1-42)||(6470620-6470661)
chr8 (1-50)||(31127803-31127852)
chr8 (1-49)||(29791156-29791204)
chr8 (58-102)||(33058013-33058057)
chr8 (1-48)||(30380744-30380791)
chr8 (3-46)||(38845823-38845866)
chr8 (56-102)||(33059832-33059878)
chr8 (1-35)||(39361339-39361373)
chr8 (1-48)||(1580768-1580812)
chr8 (65-102)||(33058612-33058649)
chr8 (58-102)||(33060429-33060473)
chr8 (13-49)||(40013650-40013686)
[»] chr1 (25 HSPs)
chr1 (1-51)||(25531992-25532042)
chr1 (1-48)||(30529050-30529097)
chr1 (1-50)||(3898569-3898618)
chr1 (1-50)||(16265247-16265296)
chr1 (1-50)||(16266376-16266425)
chr1 (1-50)||(26441848-26441897)
chr1 (1-50)||(43680284-43680333)
chr1 (3-48)||(49805252-49805297)
chr1 (1-49)||(45234848-45234896)
chr1 (1-49)||(48264810-48264858)
chr1 (1-48)||(50876578-50876625)
chr1 (1-51)||(4605213-4605263)
chr1 (1-51)||(32988346-32988396)
chr1 (1-49)||(42708714-42708762)
chr1 (1-49)||(52379203-52379251)
chr1 (1-48)||(1849915-1849962)
chr1 (1-48)||(29162057-29162104)
chr1 (1-48)||(38458944-38458991)
chr1 (1-48)||(39354264-39354311)
chr1 (65-99)||(26533663-26533697)
chr1 (1-35)||(48219655-48219689)
chr1 (1-50)||(24982565-24982614)
chr1 (1-49)||(32565952-32566000)
chr1 (1-49)||(37281306-37281354)
chr1 (4-48)||(50539477-50539521)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-49)||(15215-15263)
[»] chr7 (20 HSPs)
chr7 (1-49)||(47713501-47713549)
chr7 (1-48)||(31466358-31466405)
chr7 (1-51)||(48531536-48531586)
chr7 (1-50)||(10464113-10464162)
chr7 (1-49)||(19072983-19073031)
chr7 (1-49)||(37950944-37950992)
chr7 (1-48)||(4612087-4612134)
chr7 (1-48)||(23473969-23474016)
chr7 (1-48)||(34478008-34478055)
chr7 (1-48)||(36819910-36819957)
chr7 (1-48)||(47081194-47081241)
chr7 (1-50)||(35500745-35500794)
chr7 (1-50)||(37231561-37231610)
chr7 (1-48)||(36859208-36859255)
chr7 (1-48)||(42834292-42834339)
chr7 (1-48)||(47538137-47538184)
chr7 (67-96)||(2450169-2450198)
chr7 (65-102)||(3831605-3831642)
chr7 (1-34)||(21392232-21392265)
chr7 (4-48)||(36905743-36905787)
[»] chr4 (31 HSPs)
chr4 (1-49)||(45198339-45198387)
chr4 (1-49)||(46803846-46803894)
chr4 (1-48)||(7738819-7738866)
chr4 (1-50)||(5735485-5735534)
chr4 (1-50)||(6922938-6922987)
chr4 (1-50)||(47579500-47579549)
chr4 (1-49)||(3442343-3442391)
chr4 (1-49)||(4209573-4209621)
chr4 (1-49)||(4264348-4264396)
chr4 (1-49)||(18359972-18360020)
chr4 (1-49)||(36602908-36602956)
chr4 (1-48)||(1377245-1377292)
chr4 (1-48)||(23603647-23603694)
chr4 (1-48)||(28152205-28152252)
chr4 (1-35)||(3443400-3443434)
chr4 (1-51)||(26205701-26205751)
chr4 (3-48)||(5744083-5744128)
chr4 (1-50)||(25644573-25644622)
chr4 (8-48)||(37688033-37688073)
chr4 (1-49)||(39260131-39260179)
chr4 (53-97)||(44550143-44550187)
chr4 (1-49)||(55190565-55190613)
chr4 (1-48)||(6494804-6494851)
chr4 (1-48)||(20678588-20678635)
chr4 (1-35)||(5123170-5123204)
chr4 (1-35)||(28166488-28166522)
chr4 (1-35)||(49768659-49768693)
chr4 (1-50)||(3901137-3901186)
chr4 (4-45)||(19525717-19525758)
chr4 (58-102)||(32692689-32692733)
chr4 (1-33)||(42187015-42187047)
[»] chr5 (22 HSPs)
chr5 (1-50)||(970352-970401)
chr5 (1-50)||(4299831-4299880)
chr5 (1-50)||(22613707-22613756)
chr5 (1-50)||(32002012-32002061)
chr5 (1-49)||(5212921-5212969)
chr5 (1-49)||(32334637-32334685)
chr5 (1-49)||(35447996-35448044)
chr5 (1-49)||(42148521-42148569)
chr5 (1-48)||(39894995-39895042)
chr5 (1-50)||(16048299-16048348)
chr5 (1-50)||(43067435-43067484)
chr5 (56-96)||(1950668-1950708)
chr5 (1-45)||(39036624-39036668)
chr5 (53-96)||(731519-731562)
chr5 (1-48)||(5364638-5364685)
chr5 (1-48)||(35290500-35290547)
chr5 (1-48)||(38698177-38698224)
chr5 (1-31)||(39405978-39406008)
chr5 (55-96)||(7212296-7212337)
chr5 (59-96)||(26636836-26636873)
chr5 (4-49)||(29627485-29627530)
chr5 (1-49)||(23988791-23988839)
[»] chr3 (28 HSPs)
chr3 (1-50)||(18659266-18659315)
chr3 (1-49)||(10435333-10435381)
chr3 (1-49)||(29728097-29728145)
chr3 (1-49)||(38833877-38833925)
chr3 (1-49)||(54840127-54840175)
chr3 (1-48)||(7459820-7459867)
chr3 (1-48)||(8559005-8559052)
chr3 (1-48)||(34827467-34827514)
chr3 (1-48)||(46483762-46483809)
chr3 (1-51)||(32285173-32285223)
chr3 (1-35)||(38492265-38492299)
chr3 (1-51)||(52668483-52668533)
chr3 (1-50)||(4238492-4238541)
chr3 (1-50)||(32951134-32951183)
chr3 (53-101)||(4980883-4980931)
chr3 (1-49)||(10571143-10571191)
chr3 (1-49)||(21907210-21907258)
chr3 (1-49)||(37833114-37833162)
chr3 (1-48)||(27849150-27849197)
chr3 (1-35)||(1327526-1327560)
chr3 (59-101)||(50970615-50970657)
chr3 (59-101)||(51073751-51073793)
chr3 (59-96)||(7138414-7138451)
chr3 (1-50)||(17053078-17053127)
chr3 (1-50)||(45167513-45167562)
chr3 (1-49)||(36665232-36665280)
chr3 (1-45)||(47638269-47638313)
chr3 (1-49)||(48706845-48706893)
[»] chr6 (10 HSPs)
chr6 (1-49)||(8796263-8796311)
chr6 (1-48)||(18992117-18992164)
chr6 (1-48)||(20662059-20662106)
chr6 (1-50)||(25163378-25163427)
chr6 (8-48)||(29979024-29979064)
chr6 (1-48)||(22020490-22020537)
chr6 (1-48)||(25435625-25435672)
chr6 (1-48)||(30237381-30237428)
chr6 (4-50)||(16696014-16696060)
chr6 (1-49)||(31855032-31855080)
[»] chr2 (23 HSPs)
chr2 (1-49)||(7442890-7442938)
chr2 (1-49)||(18718453-18718501)
chr2 (1-49)||(23671590-23671638)
chr2 (1-48)||(14707535-14707582)
chr2 (53-96)||(15577642-15577685)
chr2 (1-48)||(20517632-20517679)
chr2 (1-48)||(40425249-40425296)
chr2 (1-51)||(9877080-9877130)
chr2 (1-35)||(30708942-30708976)
chr2 (3-48)||(27559791-27559836)
chr2 (1-46)||(44283281-44283326)
chr2 (1-49)||(3987231-3987279)
chr2 (1-49)||(14372291-14372339)
chr2 (1-49)||(34827126-34827174)
chr2 (53-96)||(8393709-8393752)
chr2 (53-96)||(36847256-36847299)
chr2 (1-48)||(44330598-44330645)
chr2 (53-96)||(44462188-44462231)
chr2 (3-49)||(4045232-4045278)
chr2 (1-35)||(36198964-36198998)
chr2 (1-31)||(40598343-40598373)
chr2 (66-102)||(15756589-15756625)
chr2 (1-49)||(41172756-41172804)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-35)||(12966-13000)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-35)||(10607-10641)
scaffold0366 (1-35)||(14273-14307)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-35)||(44121-44155)
[»] scaffold0604 (1 HSPs)
scaffold0604 (1-50)||(1322-1371)
[»] scaffold0027 (1 HSPs)
scaffold0027 (8-45)||(117542-117579)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 20096752 - 20096898
Alignment:
Q  54 acaatttttactttttcaaattcattaaataactgatgtatctgaactagtgagagttacgtcctagcatgaa-ttccaatgacaggttgacaatttaat 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||  |||||||||||||||||    
T  20096752 acaatttttactttttcaaattcattaaataactgatgtatctgaactagtgagagttacgtactagcatgaatttccaatttcaggttgacaatttaat 20096851  T
Q  153 gaaagtagaagaggtggagatttactatgaccctgcagagctgatgg 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20096852 gaaagcagaagaggtggagatttactatgaccctgcagagctgatgg 20096898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6471059 - 6471106
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  6471059 ataatgtatattgtcaactaggtcatctattaagggacagagggagta 6471106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18809490 - 18809539
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  18809490 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 18809539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8350927 - 8350879
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  8350927 ataatgtatattgtcaactaggtcatttattaagggatggagggagtat 8350879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43066340 - 43066388
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  43066340 ataatgtatattgtcgactaggtcatttattaagggacggagggagtat 43066388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45082026 - 45082074
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  45082026 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 45082074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2986539 - 2986586
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||    
T  2986539 ataatgtatattgtcaactaagtcatttattaagggacggagggagta 2986586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3293148 - 3293101
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||    
T  3293148 ataatgtatattgtcaactgggtcatttattaagggacggagggagta 3293101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14522593 - 14522640
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||    
T  14522593 ataatgtatattgtcaactaggtcatctattaagggacggagggagta 14522640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23249066 - 23249113
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  23249066 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 23249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30290138 - 30290185
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  30290138 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 30290185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 2805516 - 2805475
Alignment:
Q  8 atattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  2805516 atattgtcaactaggtcatttattaagggacggagggagtat 2805475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6470661 - 6470620
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagag 42  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  6470661 ataatgtatattgtcaactaggtcatctattaagggacagag 6470620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31127852 - 31127803
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||| ||||||||||||||||||||||||| ||| || |||||||||||    
T  31127852 ataatatatattgtcaactaggtcatttattgagggacggagggagtata 31127803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29791156 - 29791204
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| ||  |||||||||    
T  29791156 ataatgcatattgtcaactaggtcatttattaagggacgtagggagtat 29791204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 33058013 - 33058057
Alignment:
Q  58 tttttactttttcaaattcattaaataactgatgtatctgaacta 102  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||||    
T  33058013 tttttactttttcatattcattaaataattgatgtatctggacta 33058057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30380744 - 30380791
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| | ||||||||||||| || |||||||||    
T  30380744 ataatgtatattgtcaactggatcatttattaagggacggagggagta 30380791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 38845823 - 38845866
Alignment:
Q  3 aatgtatattgtcaactaggtcatttattaaggaacagagggag 46  Q
    ||||||||||||||||| ||||||||||||||| || |||||||    
T  38845823 aatgtatattgtcaactgggtcatttattaagggacggagggag 38845866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 33059832 - 33059878
Alignment:
Q  56 aatttttactttttcaaattcattaaataactgatgtatctgaacta 102  Q
    ||||||| |||||||| ||||||||||||| ||||||||||| ||||    
T  33059832 aatttttgctttttcagattcattaaataattgatgtatctggacta 33059878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39361339 - 39361373
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  39361339 ataatgcatattgtcaactaggtcatttattaagg 39361373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1580812 - 1580768
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||   |||||||||||||||||||| |||||||||    
T  1580812 ataatgtatattgtc---taggtcatttattaaggaacggagggagta 1580768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 33058612 - 33058649
Alignment:
Q  65 tttttcaaattcattaaataactgatgtatctgaacta 102  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  33058612 tttttcagattcattaaataattgatgtatctgaacta 33058649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 33060429 - 33060473
Alignment:
Q  58 tttttactttttcaaattcattaaataactgatgtatctgaacta 102  Q
    ||||| ||||||||||||| |||||||| | ||||||||||||||    
T  33060429 tttttgctttttcaaattcgttaaataatttatgtatctgaacta 33060473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 40013686 - 40013650
Alignment:
Q  13 gtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||| || ||||||||||    
T  40013686 gtcaactaggtcatttattaagggacggagggagtat 40013650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25531992 - 25532042
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  25531992 ataatgtatattgtcaactaggtcatttattaagggacggagggagtatat 25532042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30529097 - 30529050
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||    
T  30529097 ataatgtatattgtcaactaggtcatttattaagggacggagggagta 30529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3898618 - 3898569
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  3898618 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 3898569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16265247 - 16265296
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  16265247 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 16265296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16266376 - 16266425
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  16266376 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 16266425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26441848 - 26441897
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  26441848 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 26441897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43680284 - 43680333
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  43680284 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 43680333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 49805297 - 49805252
Alignment:
Q  3 aatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||    
T  49805297 aatgtatattgtcaactgggtcatttattaaggaacggagggagta 49805252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45234896 - 45234848
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||    
T  45234896 ataatgtatattgtcaactaggtcatttattaagagacggagggagtat 45234848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48264858 - 48264810
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  48264858 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 48264810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50876578 - 50876625
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  50876578 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 50876625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4605213 - 4605263
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    ||||||||||||||||| |||||||| |||||||| || ||||||||||||    
T  4605213 ataatgtatattgtcaaataggtcatctattaagggacggagggagtatat 4605263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32988396 - 32988346
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    ||||||||||||||||||| | ||||||||||||| || ||||||||||||    
T  32988396 ataatgtatattgtcaactggatcatttattaagggacggagggagtatat 32988346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42708714 - 42708762
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || || |||||||    
T  42708714 ataatgcatattgtcaactaggtcatttattaagggacggatggagtat 42708762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52379203 - 52379251
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||| | || ||||||||||    
T  52379203 ataatgcatattgtcaactaggtcatttattaaaggacggagggagtat 52379251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1849915 - 1849962
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| || || ||||||    
T  1849915 ataatgtatattgtcaactgggtcatttattaagggacggatggagta 1849962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29162057 - 29162104
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||| || |||||||||| || |||||||||    
T  29162057 ataatgtatattgtcaactagatcgtttattaagggacggagggagta 29162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38458944 - 38458991
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| |  |||||||||    
T  38458944 ataatgtatattgtcaactgggtcatttattaagggatggagggagta 38458991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39354311 - 39354264
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| ||| |||||||||||||||||||||||| || |||||||||    
T  39354311 ataatgcatactgtcaactaggtcatttattaagggacggagggagta 39354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 26533697 - 26533663
Alignment:
Q  65 tttttcaaattcattaaataactgatgtatctgaa 99  Q
    ||||||| |||||||||||||||||||||||||||    
T  26533697 tttttcagattcattaaataactgatgtatctgaa 26533663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48219689 - 48219655
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  48219689 ataatgcatattgtcaactaggtcatttattaagg 48219655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24982565 - 24982614
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||| |||||||||||| |||||||||||| ||| || |||||||||||    
T  24982565 ataatatatattgtcaacaaggtcatttattgagggacggagggagtata 24982614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32565952 - 32566000
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||| || | ||||||||||| ||||||||||    
T  32565952 ataatgcatattgtcaactagatcgtctattaaggaactgagggagtat 32566000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37281306 - 37281354
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||| ||||||||||||||| |||| |||||||| || ||||||||||    
T  37281306 ataatatatattgtcaactagatcatctattaagggacggagggagtat 37281354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 50539477 - 50539521
Alignment:
Q  4 atgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||  |||||||||||||| || |||||||||    
T  50539477 atgtatattgtcaactgagtcatttattaagggacggagggagta 50539521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15263 - 15215
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  15263 ataatgtatattgtcaactaggtcatttattaagggacggagggagtat 15215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47713549 - 47713501
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  47713549 ataatgtatattgtcaactgggtcatttattaagggacagagggagtat 47713501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31466405 - 31466358
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||    
T  31466405 ataatgtatattgtcaactaggtcatttattaagggacggagggagta 31466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48531536 - 48531586
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  48531536 ataatgtatattgtcaactaggtcatctattaagggacggagggagtatat 48531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10464162 - 10464113
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  10464162 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 10464113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19072983 - 19073031
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  19072983 ataatgtatattgtcaactgggtcatttattaagggacggagggagtat 19073031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37950992 - 37950944
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  37950992 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 37950944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4612134 - 4612087
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||    
T  4612134 ataatgtatattgtcaactgggtcatttattaagggacggagggagta 4612087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23474016 - 23473969
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||    
T  23474016 ataatgtatattgtcaactaggtcatttattaagggacggatggagta 23473969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34478055 - 34478008
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||    
T  34478055 ataatgtatattgtcaactaggtcatttattgagggacggagggagta 34478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36819910 - 36819957
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  36819910 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 36819957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47081194 - 47081241
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  47081194 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 47081241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35500794 - 35500745
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||| ||||| ||| || |||||||||||    
T  35500794 ataatgtatattgtcaactaggtcaattattgagggacggagggagtata 35500745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37231610 - 37231561
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||||||||||||||||||||| |||||| ||| || |||||||||||    
T  37231610 ataatgtatattgtcaactaggtcgtttattgagggacggagggagtata 37231561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36859255 - 36859208
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||    
T  36859255 ataatgcatattgtcaactaagtcatttattaagggacggagggagta 36859208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42834339 - 42834292
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||| ||||||||||||||||||| || |||||||||    
T  42834339 ataatgcatattgtcgactaggtcatttattaagggacggagggagta 42834292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47538137 - 47538184
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||||||||| ||||||||  | |||||||||    
T  47538137 ataatgtatattgtcaactaggtcatctattaaggggcggagggagta 47538184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 2450169 - 2450198
Alignment:
Q  67 tttcaaattcattaaataactgatgtatct 96  Q
    ||||||||||||||||||||||||||||||    
T  2450169 tttcaaattcattaaataactgatgtatct 2450198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 3831605 - 3831642
Alignment:
Q  65 tttttcaaattcattaaataactgatgtatctgaacta 102  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  3831605 tttttcagattcattaaataactgatgcatctgaacta 3831642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21392232 - 21392265
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaag 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  21392232 ataatgtatattgtcaactaggttatttattaag 21392265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 36905743 - 36905787
Alignment:
Q  4 atgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||| ||||||||||| ||| || |||||||||    
T  36905743 atgtatattgtcaactgggtcatttatttagggacggagggagta 36905787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45198387 - 45198339
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  45198387 ataatgtatattgtcaactaggtcatttattaagggacggagggagtat 45198339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46803846 - 46803894
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  46803846 ataatgcatattgtcaactaggtcatttattaagggacagagggagtat 46803894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7738866 - 7738819
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||    
T  7738866 ataatgtatattgtcaactaggtcatttattaagggacggagggagta 7738819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5735485 - 5735534
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||    
T  5735485 ataatgcatattgtcaactaggtcatttattaagggacggagggagtata 5735534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6922987 - 6922938
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  6922987 ataatgtatattatcaactaggtcatttattgaggaacggagggagtata 6922938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 47579500 - 47579549
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||    
T  47579500 ataatgcatattgtcaactaggtcatttattaagggacggagggagtata 47579549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3442391 - 3442343
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  3442391 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 3442343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4209573 - 4209621
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||    
T  4209573 ataatgtatattgtcaactaggtcatctattaagggacggagggagtat 4209621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4264348 - 4264396
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||    
T  4264348 ataatgtatattgtcaactaagtcatttattaagggacggagggagtat 4264396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18360020 - 18359972
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||    
T  18360020 ataatgtatattgtcaactaggtcatctattaagggacggagggagtat 18359972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36602908 - 36602956
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||    
T  36602908 ataatgtatattgtcaactaggtcatctattaagggacggagggagtat 36602956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1377245 - 1377292
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  1377245 ataatgtatattgtcaactggatcatttattaagggacagagggagta 1377292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23603694 - 23603647
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||    
T  23603694 ataatgtatattgtcaactaggtcatctattgaggaacggagggagta 23603647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28152205 - 28152252
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  28152205 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 28152252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3443434 - 3443400
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3443434 ataatgtatattgtcaactaggtcatttattaagg 3443400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26205751 - 26205701
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    |||||| ||||||||||||| |||||||||||||| || ||||||||||||    
T  26205751 ataatgcatattgtcaactaagtcatttattaagggacggagggagtatat 26205701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 5744128 - 5744083
Alignment:
Q  3 aatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||    
T  5744128 aatgtatattgtcaactgggtcatttattaagggacggagggagta 5744083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25644573 - 25644622
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| | | || |||||||||||    
T  25644573 ataatgtatattgtcaactaggtcatttattgaaggacggagggagtata 25644622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 37688073 - 37688033
Alignment:
Q  8 atattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  37688073 atattgtcaactagatcatttattaaggaacggagggagta 37688033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39260179 - 39260131
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||||||||||||| |||||||| || |||| |||||    
T  39260179 ataatgtatattgtcaactaggtcatctattaagggacggaggaagtat 39260131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 44550143 - 44550187
Alignment:
Q  53 aacaatttttactttttcaaattcattaaataactgatgtatctg 97  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||    
T  44550143 aacaacttttacctttttaaattcattaaataactgatgtatctg 44550187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 55190613 - 55190565
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||| || |||||||| || ||||||||||    
T  55190613 ataatgtatattgtcaactaggttatctattaagggacggagggagtat 55190565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6494804 - 6494851
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| || || ||||||    
T  6494804 ataatgtatattgtcaactgggtcatttattaagggacggaaggagta 6494851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20678635 - 20678588
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||| ||||    
T  20678635 ataatgcatattgtcaactaggtcatttattaagggacggaggaagta 20678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5123204 - 5123170
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  5123204 ataatgtatattgtcaactaggtcatctattaagg 5123170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28166488 - 28166522
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  28166488 ataatgcatattgtcaactaggtcatttattaagg 28166522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49768659 - 49768693
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  49768659 ataatgcatattgtcaactaggtcatttattaagg 49768693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3901186 - 3901137
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||| |||||||||||||| ||||||||||||| || |||| ||||||    
T  3901186 ataatgcatattgtcaactagatcatttattaagggacggaggaagtata 3901137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 19525758 - 19525717
Alignment:
Q  4 atgtatattgtcaactaggtcatttattaaggaacagaggga 45  Q
    |||||||||||||||||||||||||||| ||| || ||||||    
T  19525758 atgtatattgtcaactaggtcatttattgagggacggaggga 19525717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 32692689 - 32692733
Alignment:
Q  58 tttttactttttcaaattcattaaataactgatgtatctgaacta 102  Q
    ||||| |||||| | ||||||||||||| ||||||||||||||||    
T  32692689 ttttttctttttaagattcattaaataagtgatgtatctgaacta 32692733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42187047 - 42187015
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  42187047 ataatgtatattgtcaactaggtcatctattaa 42187015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 970352 - 970401
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  970352 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 970401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4299880 - 4299831
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  4299880 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 4299831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22613756 - 22613707
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  22613756 ataatgtatattgtcaactaggtcatttattgagggacggagggagtata 22613707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32002061 - 32002012
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||    
T  32002061 ataatgtatattgtcaactgggtcatttattaagggacggagggagtata 32002012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5212969 - 5212921
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||    
T  5212969 ataatgtatattgtcaactaggtcatttattaagagacggagggagtat 5212921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32334685 - 32334637
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  32334685 ataatgtatattgtcaactgggtcatttattaagggacggagggagtat 32334637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35448044 - 35447996
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  35448044 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 35447996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42148521 - 42148569
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  42148521 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 42148569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39894995 - 39895042
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||    
T  39894995 ataatgtatattgtcaactgggtcatttattaagggacggagggagta 39895042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16048299 - 16048348
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || || ||||||||    
T  16048299 ataatgtatattgtcaactaggtcatttattgagggacggacggagtata 16048348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43067435 - 43067484
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||||||||||| ||| || || ||||||||    
T  43067435 ataatgtatattgtcaactaggtcatttattgagggacggatggagtata 43067484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 1950708 - 1950668
Alignment:
Q  56 aatttttactttttcaaattcattaaataactgatgtatct 96  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  1950708 aatttttaattttttaaattcattaaataactgatgtatct 1950668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39036624 - 39036668
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagaggga 45  Q
    |||||||||||||||||||||||||| |||||||| || ||||||    
T  39036624 ataatgtatattgtcaactaggtcatctattaagggacggaggga 39036668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 731562 - 731519
Alignment:
Q  53 aacaatttttactttttcaaattcattaaataactgatgtatct 96  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||    
T  731562 aacaacttttactttttcaaattcattaaacaaccgatgtatct 731519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5364638 - 5364685
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| || ||| |||||    
T  5364638 ataatgtatattgtcaactgggtcatttattaagggacggagagagta 5364685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35290500 - 35290547
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||||||||| |||||||| || |||| ||||    
T  35290500 ataatgtatattgtcaactaggtcatctattaagggacggaggaagta 35290547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38698177 - 38698224
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||    
T  38698177 ataatgcatattgtcaactaagtcatttattaagggacggagggagta 38698224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 39405978 - 39406008
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttatt 31  Q
    |||||||||||||||||||||||||||||||    
T  39405978 ataatgtatattgtcaactaggtcatttatt 39406008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 7212296 - 7212337
Alignment:
Q  55 caatttttactttttcaaattcattaaataactgatgtatct 96  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    
T  7212296 caatttttcctttttcagattcattaaataagtgatgtatct 7212337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 26636836 - 26636873
Alignment:
Q  59 ttttactttttcaaattcattaaataactgatgtatct 96  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  26636836 ttttactttttcagattcattaaataaatgatgtatct 26636873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 29627485 - 29627530
Alignment:
Q  4 atgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||| ||||||||||| ||| || ||||||||||    
T  29627485 atgtatattgtcaactgggtcatttatttagggacggagggagtat 29627530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23988791 - 23988839
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| ||||||||||||| |||||||||||||| || || |||||||    
T  23988791 ataatgcatattgtcaactaagtcatttattaagggacggatggagtat 23988839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18659266 - 18659315
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||    
T  18659266 ataatgcatattgtcaactaggtcatttattaagggacggagggagtata 18659315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10435333 - 10435381
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  10435333 ataatgtatattgtcaactaggtcatttattgagggacggagggagtat 10435381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29728145 - 29728097
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||||||    
T  29728145 ataatgtatattgtcaactagatcatttattaagggacggagggagtat 29728097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38833877 - 38833925
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  38833877 ataatgtatattgtcaactgggtcatttattaagggacggagggagtat 38833925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54840175 - 54840127
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  54840175 ataatgtatattgtcaactgggtcatttattaagggacggagggagtat 54840127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7459867 - 7459820
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  7459867 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 7459820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8559052 - 8559005
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  8559052 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 8559005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34827467 - 34827514
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||||    
T  34827467 ataatatatattgtcaactaggtcatttattaagggacggagggagta 34827514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46483762 - 46483809
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  46483762 ataatgtatattgtcaactagatcatctattaagggacagagggagta 46483809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32285223 - 32285173
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    |||||||||||||||||||||| ||| ||||||||||| || |||||||||    
T  32285223 ataatgtatattgtcaactaggccatctattaaggaacggatggagtatat 32285173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38492265 - 38492299
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38492265 ataatgtatattgtcaactaggtcatttattaagg 38492299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 52668533 - 52668483
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    |||||| |||||||||||||||| ||||||||||| || ||||||||||||    
T  52668533 ataatgcatattgtcaactaggtgatttattaagggacggagggagtatat 52668483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4238541 - 4238492
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||||||||||||||||| |||||||||| ||| || |||||||||||    
T  4238541 ataatgtatattgtcaactaagtcatttattgagggacggagggagtata 4238492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32951183 - 32951134
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||| ||||||||| ||| || |||||||||||    
T  32951183 ataatgtatattgtcaactagatcatttattgagggacggagggagtata 32951134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 4980931 - 4980883
Alignment:
Q  53 aacaatttttactttttcaaattcattaaataactgatgtatctgaact 101  Q
    ||||| ||||||||||||||||||||||||||| | |||||||| ||||    
T  4980931 aacaacttttactttttcaaattcattaaataatttatgtatctaaact 4980883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10571191 - 10571143
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||| ||| ||||||||||| || ||||||||||    
T  10571191 ataatgtatattgtcaactgggttatttattaagggacggagggagtat 10571143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21907210 - 21907258
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||||||||||||||||  |||||||||||||| || ||||||||||    
T  21907210 ataatgtatattgtcaactgagtcatttattaagggacggagggagtat 21907258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37833114 - 37833162
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| ||||||| |||||||||||||||||||| || ||||||||||    
T  37833114 ataatgcatattgttaactaggtcatttattaagggacggagggagtat 37833162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27849150 - 27849197
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||||||||| |||||||| || || ||||||    
T  27849150 ataatgtatattgtcaactaggtcatctattaagggacggaaggagta 27849197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1327526 - 1327560
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  1327526 ataatgcatattgtcaactaggtcatttattaagg 1327560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 50970657 - 50970615
Alignment:
Q  59 ttttactttttcaaattcattaaataactgatgtatctgaact 101  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||    
T  50970657 ttttactttttcagattcattaaataattgatgtatctaaact 50970615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 51073793 - 51073751
Alignment:
Q  59 ttttactttttcaaattcattaaataactgatgtatctgaact 101  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||    
T  51073793 ttttactttttcagattcattaaataattgatgtatctaaact 51073751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 7138414 - 7138451
Alignment:
Q  59 ttttactttttcaaattcattaaataactgatgtatct 96  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  7138414 ttttcctttttcaaattcattaaataaccgatgtatct 7138451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17053078 - 17053127
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||| ||||||||||| ||| || ||| |||||||    
T  17053078 ataatgtatattgtcaactgggtcatttattgagggacggagagagtata 17053127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45167513 - 45167562
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||| | |||| |||||||| || |||||||||||    
T  45167513 ataatgtatattgtcaactggatcatatattaagggacggagggagtata 45167562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36665232 - 36665280
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||| |||||||| |||||||| || ||||| ||||    
T  36665232 ataatgtatattgtcaaataggtcatctattaagggacggagggggtat 36665280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47638269 - 47638313
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagaggga 45  Q
    ||||||||||||||||| |||||||| |||||||| || ||||||    
T  47638269 ataatgtatattgtcaattaggtcatctattaagggacggaggga 47638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48706893 - 48706845
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||| ||||||||||||| | ||||||||||||| || ||||||||||    
T  48706893 ataatatatattgtcaactggatcatttattaagggacggagggagtat 48706845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8796263 - 8796311
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  8796263 ataatgtatattgtcaactgggtcatttattaagggacggagggagtat 8796311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18992117 - 18992164
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||||||||||||||||||| || ||| |||||    
T  18992117 ataatgtatattgtcaactaggtcatttattaagggacggagcgagta 18992164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20662106 - 20662059
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  20662106 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 20662059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25163378 - 25163427
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||||||||||||||||| |||||||||| ||| || |||||||||||    
T  25163378 ataatgtatattgtcaactatgtcatttattgagggacggagggagtata 25163427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 29979064 - 29979024
Alignment:
Q  8 atattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  29979064 atattgtcaactaggtcatttattaagggacggagggagta 29979024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22020490 - 22020537
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||| ||||| || |||||||||    
T  22020490 ataatgtatattgtcaactgggtcatttaataagggacggagggagta 22020537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25435625 - 25435672
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||||||||| || ||| |||||    
T  25435625 ataatgtatattgtcaactgggtcatttattaagggacggagagagta 25435672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30237381 - 30237428
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||||||||||||||||| |||||||||||||| ||  ||||||||    
T  30237381 ataatgtatattgtcaactatgtcatttattaagggacgaagggagta 30237428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 16696060 - 16696014
Alignment:
Q  4 atgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    ||||||||||||||||||||||| |||| ||| || |||||||||||    
T  16696060 atgtatattgtcaactaggtcatctattgagggacggagggagtata 16696014  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31855032 - 31855080
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||| ||||||||||||||  |||||||||||||| || ||||||||||    
T  31855032 ataacgtatattgtcaactgagtcatttattaagggacggagggagtat 31855080  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7442938 - 7442890
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||||||    
T  7442938 ataatgtatattgtcaactagatcatttattaagggacggagggagtat 7442890  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18718453 - 18718501
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  18718453 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 18718501  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23671590 - 23671638
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||    
T  23671590 ataatgcatattgtcaactaggtcatttattaagggacggagggagtat 23671638  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14707582 - 14707535
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  14707582 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 14707535  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 15577685 - 15577642
Alignment:
Q  53 aacaatttttactttttcaaattcattaaataactgatgtatct 96  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  15577685 aacaacttttacttttttaaattcattaaataactgatgtatct 15577642  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20517632 - 20517679
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  20517632 ataatgcatattgtcaactaagtcatttattaaggaacggagggagta 20517679  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40425296 - 40425249
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||    
T  40425296 ataatgcatattgtcaactaggtcatttattaagggacggagggagta 40425249  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9877130 - 9877080
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtatat 51  Q
    ||||||||||||||||| |||||||| |||||||| || ||||||||||||    
T  9877130 ataatgtatattgtcaattaggtcatctattaagggacggagggagtatat 9877080  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30708942 - 30708976
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30708942 ataatgtatattgtcaactaggtcatttattaagg 30708976  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 27559791 - 27559836
Alignment:
Q  3 aatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||    
T  27559791 aatgtatattgtcaactgggtcatttattaagggacggagggagta 27559836  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44283326 - 44283281
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggag 46  Q
    |||||| |||||||||||||||||||||||||||| || |||||||    
T  44283326 ataatgcatattgtcaactaggtcatttattaagggacggagggag 44283281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3987279 - 3987231
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| ||||||||||||| |||||||||||||| || ||||||||||    
T  3987279 ataatgcatattgtcaactaagtcatttattaagggacggagggagtat 3987231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14372291 - 14372339
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||| ||||||||||||||||| || ||||||||||    
T  14372291 ataatgcatattgtcaattaggtcatttattaagggacggagggagtat 14372339  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34827126 - 34827174
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||| ||||||||||||| ||||||||||||||| || ||||||||||    
T  34827126 ataatatatattgtcaactgggtcatttattaagggacggagggagtat 34827174  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 8393709 - 8393752
Alignment:
Q  53 aacaatttttactttttcaaattcattaaataactgatgtatct 96  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||    
T  8393709 aacaacttttacttttttaaattcattaaataaccgatgtatct 8393752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 36847256 - 36847299
Alignment:
Q  53 aacaatttttactttttcaaattcattaaataactgatgtatct 96  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||    
T  36847256 aacaacttttacttttttaaattcattaaataaccgatgtatct 36847299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44330598 - 44330645
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagta 48  Q
    ||||||||||||||||||| ||||||||| ||||| || |||||||||    
T  44330598 ataatgtatattgtcaactgggtcatttaataagggacggagggagta 44330645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 44462231 - 44462188
Alignment:
Q  53 aacaatttttactttttcaaattcattaaataactgatgtatct 96  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||    
T  44462231 aacaacttttacttttttaaattcattaaataaccgatgtatct 44462188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 4045278 - 4045232
Alignment:
Q  3 aatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    ||||||||||||||| | ||||||||||||||| || ||||||||||    
T  4045278 aatgtatattgtcaaatgggtcatttattaagggacggagggagtat 4045232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36198998 - 36198964
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  36198998 ataatgcatattgtcaactaggtcatttattaagg 36198964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 40598343 - 40598373
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttatt 31  Q
    |||||||||||||||||||||||||||||||    
T  40598343 ataatgtatattgtcaactaggtcatttatt 40598373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 15756589 - 15756625
Alignment:
Q  66 ttttcaaattcattaaataactgatgtatctgaacta 102  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  15756589 tttttaaattaattaaataactgatgtatctgaacta 15756625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41172804 - 41172756
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtat 49  Q
    |||||| |||||||||||||| ||||||||||||| || | ||||||||    
T  41172804 ataatgcatattgtcaactagatcatttattaagggacggggggagtat 41172756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12966 - 13000
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  12966 ataatgtatattgtcaactgggtcatttattaagg 13000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10607 - 10641
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  10607 ataatgtatattgtcaactgggtcatttattaagg 10641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14273 - 14307
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  14273 ataatgtatattgtcaactgggtcatttattaagg 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44155 - 44121
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaagg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  44155 ataatgcatattgtcaactaggtcatttattaagg 44121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1322 - 1371
Alignment:
Q  1 ataatgtatattgtcaactaggtcatttattaaggaacagagggagtata 50  Q
    |||||||||||||||||||||||||| |||| | | || |||||||||||    
T  1322 ataatgtatattgtcaactaggtcatctattgacggacggagggagtata 1371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 117542 - 117579
Alignment:
Q  8 atattgtcaactaggtcatttattaaggaacagaggga 45  Q
    |||||||||||||||||||||||||||| || ||||||    
T  117542 atattgtcaactaggtcatttattaagggacggaggga 117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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