View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_67 (Length: 211)
Name: NF20437_low_67
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 14396573 - 14396722
Alignment:
| Q |
44 |
attgatcatatgcaaattaagattacgagaccaaaacaaaaaataaatgggttaaagtctcaggttcgttcttgagtagctccagaatagtcttgatatt |
143 |
Q |
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| T |
14396573 |
attgatcatatgcaaattaagattacgagaccaaaacaaaacataaatgggttgaagtctaaggttcgttcttgagtagctccagaatagtcttgatatt |
14396672 |
T |
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| Q |
144 |
ggatttcatatcatcctacttccgattgacattgttcatttgagcctggt |
193 |
Q |
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| T |
14396673 |
ggatttcatatcatcctacttcttattgaaattgttcatttgagcctggt |
14396722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 14396396 - 14396434
Alignment:
| Q |
17 |
aatattcatgttataagcaaaataagtattgatcatatg |
55 |
Q |
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| T |
14396396 |
aatattcatgttataagcaaaataagtattgatcatatg |
14396434 |
T |
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