View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20437_low_7 (Length: 578)
Name: NF20437_low_7
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20437_low_7 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 81 - 562
Target Start/End: Original strand, 53868073 - 53868554
Alignment:
| Q |
81 |
aaatttgtgatccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatacatgatcgacatatggcccgtgtcttcattt |
180 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53868073 |
aaatttatgatccaactaacgaggatcgttatgttgtaaatgttgttgataattctatggtaaatgatacatgatcgacatatggcccgtttcttcattt |
53868172 |
T |
|
| Q |
181 |
gatatattcatttttcatatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattc |
280 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53868173 |
gatatatttatttttcatatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattc |
53868272 |
T |
|
| Q |
281 |
ctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgcagttttcgccaatgacaggtgaaaaatgatatttaagtg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
53868273 |
ctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgcagttttcgttcatgacaggtgaaaaatgatatttaagtg |
53868372 |
T |
|
| Q |
381 |
ttcattacgccaatataccatagaaattatggattgcctttgttgcataggtattttgtagagtacttgggtcatatatttggtcatgttataaatggtt |
480 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53868373 |
ttcattacgccaatataacatagaaattatggattgcctttgttacataggtattttgtagagtacttgggtcatatatttggtcatgttataaatggtt |
53868472 |
T |
|
| Q |
481 |
taatttactgttctcccaaaagacccaaaatgagataagaagcataaaccaaactattttcctcaagagacacccaacatcc |
562 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
53868473 |
taatttactgttctcccaaaagacccaaaatgagataagaagcataaaccaaactattttcctcaagagaaacccaacatcc |
53868554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 90 - 481
Target Start/End: Complemental strand, 54159229 - 54158837
Alignment:
| Q |
90 |
atccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatacatgatcgacatatggcccgtgtcttcatttgatatattc |
189 |
Q |
| |
|
||||||| |||||||||| ||||| ||| || || |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
54159229 |
atccaaccaacgaggatcattatgctgtgaatgtggttgatgattctatggtaaatgatacatgattcacatatgacccgtgtcttcatttgatatattc |
54159130 |
T |
|
| Q |
190 |
atttttca-tatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagat |
288 |
Q |
| |
|
|||||| | |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
54159129 |
attttttaatatcttgcatttctttcttcatatttatgttttatcattttgtttgcagggaaagaagaaatatcttgtgctgagagagattcctgaagat |
54159030 |
T |
|
| Q |
289 |
ggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgcagttttcgccaatgacaggtgaaaaatgatatttaagtgttcattac |
388 |
Q |
| |
|
||||||| || ||||||||||||||| |||||||||||||||||||| ||||| || | | |||||||||||| ||||||||||||||||||||| |
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|
| T |
54159029 |
ggagttaaagggctgctggcgaataaggagtctttggcctcttgtgacattgcaattattgttcatgacaggtgaatgatgatatttaagtgttcattat |
54158930 |
T |
|
| Q |
389 |
gccaatataccatagaaattatggattgcctttgttgcataggtattttgtagagtacttgggtcatatatttggtcatgttataaatggttt |
481 |
Q |
| |
|
||| ||||||||| |||| || ||| | |||||||| |||||| |||||||| | ||| |||||| ||||||||||| |||| ||||||||| |
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|
| T |
54158929 |
gcctatataccattgaaaatagggactacctttgttacatagggattttgtaaaatacgtgggtcgtatatttggtcgtgtttgaaatggttt |
54158837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 53867309 - 53867394
Alignment:
| Q |
1 |
ctttgaactatgaattgttttttatatgtatgcctttcccaagtagggatgtcaatgttgacttttgccgatgttatttaaaattt |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
53867309 |
ctttgaactatgaattgttttttatatgtatgcctttcccaagtagggatttcaatgttgacttttgccgatgttatttaatattt |
53867394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 198 - 341
Target Start/End: Complemental strand, 51366031 - 51365889
Alignment:
| Q |
198 |
tatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagt-tag |
296 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||||| ||| ||| |||| |||||||||||| || |
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|
| T |
51366031 |
tatcttgcatttctttcttcaagttcatgttttatcattag--ttgcagggaaacaagaaatatcttgtgttgaaagagattcatgaagatggagtcaag |
51365934 |
T |
|
| Q |
297 |
agagctgctggcgaataataagtctttggcctcttgtgacgttgc |
341 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||||||| |||| |
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|
| T |
51365933 |
agaactgctggctaataaggagtctttggcctcttgtgacattgc |
51365889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 51366189 - 51366120
Alignment:
| Q |
91 |
tccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatacatgatcgaca |
160 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||||||| | |||||||||||||||| ||||||||| |
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|
| T |
51366189 |
tccaaccaacgaggatcgttatgctgtaaatgttgttgattttgctatggtaaatgatacttgatcgaca |
51366120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 231 - 363
Target Start/End: Complemental strand, 15048373 - 15048241
Alignment:
| Q |
231 |
atcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctct |
330 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||| ||| |||||| ||||| | | ||||||| || ||||| |||||||||||||| |
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|
| T |
15048373 |
atcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggaggagtcacaaagctgctagccaataagaagtctttggcctca |
15048274 |
T |
|
| Q |
331 |
tgtgacgttgcagttttcgccaatgacaggtga |
363 |
Q |
| |
|
|||||| ||||| |||| | ||||||||||| |
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|
| T |
15048273 |
tgtgacattgcaatttttgtttatgacaggtga |
15048241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 17881140 - 17881024
Alignment:
| Q |
231 |
atcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctct |
330 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||| ||| |||||| |||||| | | ||||||| || ||||| ||||||||||||| |
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|
| T |
17881140 |
atcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggtggagtcacaaagctgctagccaataaggagtctttggcctca |
17881041 |
T |
|
| Q |
331 |
tgtgacgttgcagtttt |
347 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
17881040 |
tgtgacattgcggtttt |
17881024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 363
Target Start/End: Complemental strand, 15015639 - 15015504
Alignment:
| Q |
228 |
tttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcc |
327 |
Q |
| |
|
|||| ||||||||||| ||| |||||| |||||| ||||||||||||| ||| |||||| |||||||| | ||||||| || || || ||||| ||| | |
|
|
| T |
15015639 |
tttaccattttgtttgtaggaaaacaaaaaatatattgtgctgagagagatttctgaaggtggagttacaaagctgctagcaaacaaggagtctctgggc |
15015540 |
T |
|
| Q |
328 |
tcttgtgacgttgcagttttcgccaatgacaggtga |
363 |
Q |
| |
|
|| |||||| |||||||||| | ||||||||||| |
|
|
| T |
15015539 |
tcatgtgacattgcagtttttgttcatgacaggtga |
15015504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 17881337 - 17881277
Alignment:
| Q |
90 |
atccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatac |
150 |
Q |
| |
|
||||||| ||||||||||| |||| |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
17881337 |
atccaaccaacgaggatcgctatgctgtaaatgttgttgatatttctatggtaaatgatac |
17881277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 336
Target Start/End: Complemental strand, 14773869 - 14773768
Alignment:
| Q |
235 |
ttttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtg |
334 |
Q |
| |
|
|||| |||| ||| |||||| |||||||||||| ||||||| ||| ||||| |||||| | |||||||||||| || || ||||||||||||| |||| |
|
|
| T |
14773869 |
ttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaacaaggagtctttggcctcatgtg |
14773770 |
T |
|
| Q |
335 |
ac |
336 |
Q |
| |
|
|| |
|
|
| T |
14773769 |
ac |
14773768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 36876230 - 36876271
Alignment:
| Q |
90 |
atccaactaacgaggatcgttatgttgtaaaagttgttgata |
131 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
36876230 |
atccaaccaacgaggatcgttatgctgtaaatgttgttgata |
36876271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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