View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20437_low_9 (Length: 552)

Name: NF20437_low_9
Description: NF20437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20437_low_9
NF20437_low_9
[»] chr1 (2 HSPs)
chr1 (13-446)||(17662298-17662719)
chr1 (13-446)||(17701360-17701784)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 17662719 - 17662298
Alignment:
Q  13 gagatgaaggtgcagcatagggtttgttcatgatgttgtgagtgtttggctcaggagagtgtacnnnnnnnctatagggtttgaact-tagggtttgaac 111  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||                   |||| ||||||||||||    
T  17662719 gagaagaaggtgaagaatagggtttgttcatgatgttgtgagtgtttggctcaggagagtgtacaaaaaa-------------aactatagggtttgaac 17662633  T
Q  112 cttgttgtttctgaatttcagtatcatgat---attcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaatagggtgaagaaaaaga 208  Q
    ||||||   |||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17662632 cttgtt---tctgaatttcagtaccatgatgatattcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaatagggtgaagaaaaaga 17662536  T
Q  209 actcatcatgatgatgttgtgatcgatgtagcagtggaattgaactgagaaaatagggtttgaagcaacaaagcgatggaaagcgtggttgtgaaacagc 308  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||     
T  17662535 actcatcatgatgatgttgtgatcgatgtagcagaggaattgaactgtgaaaatagggtttgaagcaacaaagcgatggaaagcgtggatgtgaagcagg 17662436  T
Q  309 aaagagaacgcgcgaagtttataaattaatagttagggcttttccgaagaaatagctagggtttatcttactttctctttctttcatcaaacttcaactt 408  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17662435 aaagagaacgcgcgaggtttataaagtaatagttaggacttttccgaagaaatagctagggtttatcttactttctctttctttcatcaaacttcaactt 17662336  T
Q  409 tcttacctttagtttattttcatcactcccttattctc 446  Q
    | ||||||||||||||||||||||||||||||||||||    
T  17662335 tgttacctttagtttattttcatcactcccttattctc 17662298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 17701360 - 17701784
Alignment:
Q  13 gagatgaaggtgcagcatagggtttgttcatgatgttgtgagtgtttggctcaggagagtgtacnnnnnnnctatagggtttgaacttagggtttgaacc 112  Q
    |||| ||||||| || |||| ||||||||||||||||||||||| || ||||||||||||||||       ||||||||||||||||||||||||||| |    
T  17701360 gagaagaaggtgaagaatagtgtttgttcatgatgttgtgagtgatttgctcaggagagtgtacagaaaaactatagggtttgaacttagggtttgaatc 17701459  T
Q  113 ttgttgtttctgaatttcagtatcatgat---attcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaatagggtgaagaaaaagaa 209  Q
    ||| ||||||| ||||||| || ||||||   |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  17701460 ttggtgtttctcaatttcattaccatgatgatattcatagttgtttttgggtttgtgatcgattgaatgatgaaaatggaaatagggtgaagaaaaagaa 17701559  T
Q  210 ctcatcatgatgatgttgtgatcgatgtagcagtggaattgaactgagaaaatagggtttgaagcaacaaagcgatggaaagcgtggttgtgaaacagca 309  Q
    ||| |||||||           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||    
T  17701560 ctcttcatgat-----------cgatgtagcagtggaattgaactgagaaaatagggtttgaagaaacaaagcgatggaaagcgtggatgtgaagcacca 17701648  T
Q  310 aagagaacgcgcgaagtttataaattaatagttagggcttttccgaagaaatagctagggtttatcttactttctctttctttcatcaaacttcaacttt 409  Q
    || ||| ||||||| |||||||||  ||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  17701649 aacagatcgcgcgaggtttataaagcaatagctaggg-ttttccgaagaaatagctagggtttatcttaatttatctttctttcatcaaacttcaacttt 17701747  T
Q  410 cttacctttagtttattttcatcactcccttattctc 446  Q
     | ||| || |||||||||||||||||||||||||||    
T  17701748 gtcaccgttggtttattttcatcactcccttattctc 17701784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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