View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20438_high_11 (Length: 239)
Name: NF20438_high_11
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43090687 - 43090913
Alignment:
| Q |
1 |
ttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagt |
100 |
Q |
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| T |
43090687 |
ttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagt |
43090786 |
T |
|
| Q |
101 |
gaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatac-----ttcagtgtcctaaaat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43090787 |
gaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatacttcagttcagtgtcctaaaat |
43090886 |
T |
|
| Q |
196 |
atctgacacactcttgaatgcattcct |
222 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
43090887 |
atctgacacactcttgaatgcattcct |
43090913 |
T |
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