View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20438_high_3 (Length: 507)
Name: NF20438_high_3
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 490
Target Start/End: Original strand, 41560750 - 41561232
Alignment:
| Q |
6 |
gtagataattcttacttcacaaattgggtaagtggggttgtattaaactccaccataattgggtgtgtttgttttatgaaataaaaaagtattctaagaa |
105 |
Q |
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| T |
41560750 |
gtagacaattcttacttcacaaattgggtatgtgggattgtattaaactccaccacaattgggtgtgtttgttttatgaaataaaaaagtattctaagaa |
41560849 |
T |
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| Q |
106 |
ttatattttccgggaatataagagtggaaatttcattcctaagaaagtttnnnnnnngtgtttgtttcattatttgaattccttcgaattatttttcaag |
205 |
Q |
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| T |
41560850 |
ttatatttttcgggaatataagagtggaaatttcattcctaagaaagtttaaaaagagtgtttgtttcattatttgaattccttcgaattatttttcaag |
41560949 |
T |
|
| Q |
206 |
gcaatgatataattatcaaaatacccttactttgtataatagatgtctcaattttctctattattttcaaactaccattggccatagtatcgaacaatct |
305 |
Q |
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| T |
41560950 |
gcaatgatgtaattatcaaaatacccttactttgtataatagatgtctcaattttctctattattttcaaactaccattggccatagtatcgaacaatct |
41561049 |
T |
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| Q |
306 |
aaattaatgtccttggtaatttaaatttatcatacatcaattcatccannnnnnnnnnaagaacatcaattcatccctgagtatttttattaatgcaaaa |
405 |
Q |
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| T |
41561050 |
aaattaatgtccttggtaatttaaatttatcatacatcaattcatcca--ttttttttaagaacatcaattcatccatgagtacttttattaatgcaaaa |
41561147 |
T |
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| Q |
406 |
atagcattagatcattaacaagtattgaaagtctgtaattctctaaaataacattcgatcaataataactttcagtacttgttat |
490 |
Q |
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| T |
41561148 |
atagcattcgatcattaacaagtattgaaagcgtgtaattttctaaaataacattcgatcaataacaactttcagtacttattat |
41561232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 41561262 - 41561215
Alignment:
| Q |
390 |
ttttattaatgcaaaaatagcattagatcattaacaagtattgaaagt |
437 |
Q |
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| T |
41561262 |
ttttattaatgcaaaaatagcattcgatcaataataagtactgaaagt |
41561215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 46193241 - 46193324
Alignment:
| Q |
72 |
gtttgttttatgaaataaaaaagtattctaagaattatattttccgggaatataagagtggaaatttcattcctaagaaagttt |
155 |
Q |
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| T |
46193241 |
gtttgtttcatggaatcaaaaaatattctcggaattaactttttcaggattataagagtggaaactttattcctaagaaagttt |
46193324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 41416230 - 41416101
Alignment:
| Q |
126 |
agagtggaaatttcattcctaagaaagtttnnnnnnngtgtttgtttcattatttgaattccttcgaattatttttcaaggcaatgatataa-ttatcaa |
224 |
Q |
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| T |
41416230 |
agagtgggaattttattcctaggaaagtttgataaaagtgtttgtttgatgatttgaattcctgggaattcttttttaaagccgtgatataatttattaa |
41416131 |
T |
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| Q |
225 |
aatacccttactttgtataatagatgtctc |
254 |
Q |
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| T |
41416130 |
aatacccctactatgtaaaacatatgtctc |
41416101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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