View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20438_high_5 (Length: 330)
Name: NF20438_high_5
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_high_5 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 125 - 330
Target Start/End: Original strand, 1426708 - 1426911
Alignment:
| Q |
125 |
ctaacttccatgagttatatagagacataatgttatgtcagtgtcacccctatgcatatggaagatgataatacgtaaaattgatagtcataatatacaa |
224 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1426708 |
ctaacttccatgagttatatagggacataatgttatgtcagtgtcacccctatgcat--ggaagatgataatacgtaaaattgatagtcataatatacaa |
1426805 |
T |
|
| Q |
225 |
cctgctgtcacaagtaactgaaaataattggccaattcttaggatcttaatgcaaacgtaactttcttggaaataattagaatctataagtttctctaaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1426806 |
cctgctgtcacaagtaactgaaaataattggccaattcttaggatcttaatgcaaacgtaactttcttggaaataattagaatctataagtttctctaaa |
1426905 |
T |
|
| Q |
325 |
tagaat |
330 |
Q |
| |
|
|||||| |
|
|
| T |
1426906 |
tagaat |
1426911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1426566 - 1426677
Alignment:
| Q |
1 |
tcattatattaagcctattcatataactcttcctaacattactatagttatttcccaatactctggtattgttcaggttagtctagatttgcaacacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
1426566 |
tcattatattaagcctattcatataactcttcctaacattactatagttatttcccaatactctggtattgttcaggttagtctagattttcaactcttc |
1426665 |
T |
|
| Q |
101 |
aatgttcttcta |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1426666 |
aatgttcttcta |
1426677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University