View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20438_low_10 (Length: 252)
Name: NF20438_low_10
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_low_10 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 30761931 - 30761677
Alignment:
| Q |
1 |
ttaccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaatagg |
100 |
Q |
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| T |
30761931 |
ttaccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgagggggttcaagacaatgaaaatatagtaaaatagg |
30761832 |
T |
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| Q |
101 |
tgtaaatatgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatgtgtctaatat-aaatcccgaca-nnnnnnngattaa |
197 |
Q |
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| T |
30761831 |
tgtaaatatgaaaagttgagaaggtgcaattgaaccccctggccacaacgtggctccgacaatgtgtctaatataaaatcccgacattttttttgattaa |
30761732 |
T |
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| Q |
198 |
aataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgt |
252 |
Q |
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| T |
30761731 |
aataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgt |
30761677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 21139179 - 21139019
Alignment:
| Q |
4 |
ccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgt |
103 |
Q |
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| T |
21139179 |
ccaactttttcctagtgagagaggagagagtcgatgcaatatggtgcaaggcttaattttgagggggttcaagacaataaaaacatagtaagataggtgt |
21139080 |
T |
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| Q |
104 |
aaatatgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatg |
163 |
Q |
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| T |
21139079 |
aaatttgaatagttgagaaggtgcagttgaaccccctggccactacatggctccgccaatg |
21139019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 30749528 - 30749470
Alignment:
| Q |
192 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagt |
250 |
Q |
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| T |
30749528 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagt |
30749470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 30770979 - 30770921
Alignment:
| Q |
192 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagt |
250 |
Q |
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| T |
30770979 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagt |
30770921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 28444633 - 28444511
Alignment:
| Q |
42 |
atatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaacccctgg |
141 |
Q |
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| T |
28444633 |
atatggtgcaaggttttattttgagggggttcaaaacactaaaaatatagtaaaataggtgtaaaattgaaaagttgagaaggtggagttgaacccctga |
28444534 |
T |
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| Q |
142 |
ccacaacgtggctccgacaatgt |
164 |
Q |
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| T |
28444533 |
ccactatgtggctccgccaatgt |
28444511 |
T |
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