View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20438_low_12 (Length: 238)
Name: NF20438_low_12
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11104812 - 11105034
Alignment:
| Q |
1 |
tcaacaggaaacaacctagccaatttggaccttaccacacctgatcactttgataacaaatattactccaatcttcaaaacctcaatggcttacttggaa |
100 |
Q |
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| T |
11104812 |
tcaacaggaaacaacctagccaatttggaccttaccacacctaatcactttgataacaaatattactccaatcttcaaaacctcaatggcttacttcata |
11104911 |
T |
|
| Q |
101 |
gtgatcaagttctattctccactcctaatgcagacaccattgctattgttaacagctttagcaataaccaatctctcttctttcagaattttagggtttc |
200 |
Q |
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| T |
11104912 |
gtgatcaagttctattatccactcctaatgcagacaccattgctattgttaatagctttagcaataaccaatctctcttctttctgaattttagggtttc |
11105011 |
T |
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| Q |
201 |
gatgattaaaatggcgaatattg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
11105012 |
gatgattaaaatggcgaatattg |
11105034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 11097797 - 11098016
Alignment:
| Q |
3 |
aacaggaaacaacctagccaatttggaccttaccacacctgatcactttgataacaaatattactccaatcttcaaaacctcaatggcttacttggaagt |
102 |
Q |
| |
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|||||| ||||| || |||||||||||||||| ||||| |||| ||||| ||||||| |||||||||||||||| || ||| ||||| ||| |||| |
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| T |
11097797 |
aacagggaacaatctcaccaatttggaccttactacaccaaatcaatttgacaacaaattctactccaatcttcaaagccacaaaggcttgcttcaaagt |
11097896 |
T |
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| Q |
103 |
gatcaagttctattctccactcctaatgcagacaccattgctattgttaacagctttagcaataaccaatctctcttctttcagaattttagggtttcga |
202 |
Q |
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||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||| | |||||| ||||||||||| ||||||||||||| || | |
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| T |
11097897 |
gatcaagagttattctcaactcctaatgcagataccattgctattgttaatagctttagtagcaaccaagctctcttctttgagaattttagggtgtcca |
11097996 |
T |
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| Q |
203 |
tgattaaaatggcgaatatt |
222 |
Q |
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||||||||||||| |||||| |
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| T |
11097997 |
tgattaaaatggctaatatt |
11098016 |
T |
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