View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20438_low_14 (Length: 237)
Name: NF20438_low_14
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 20644033 - 20643807
Alignment:
| Q |
1 |
tgatttatagagaaaaac-tcgaactttaaactttaatttcttgaatttgaatttcaatttaagttgtgtacatgatcaactatgagaggctctaacgct |
99 |
Q |
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| T |
20644033 |
tgatttatagagaaaaaaatcgaactttaaactttaatttcttgaatttgaatttcaatttaagttgtgtacatgatcaactatgagaggctctaacgct |
20643934 |
T |
|
| Q |
100 |
tatgttaaata---------ttgtagttagaagttgtaaacaatctcaccgattctttcatatttgtaagccgtagaaagagcaattcatttcttggtaa |
190 |
Q |
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| T |
20643933 |
tatgttaaatacgttaaatattgtagttagaagttgtaaacaatctcaccgattctttcatatttgtaagtcgtagaaagagcaattcatttcttggtaa |
20643834 |
T |
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| Q |
191 |
gagctcatatctaatctttcacggtac |
217 |
Q |
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| T |
20643833 |
gagctcatatctaatctttcatggtac |
20643807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 33248038 - 33247815
Alignment:
| Q |
1 |
tgatttatagagaaaaactcgaactttaaactttaatttcttgaatttgaatttcaatttaagttgtgtacatgatcaactatgagaggctctaacgctt |
100 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||| |||||||| ||| |
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| T |
33248038 |
tgatttacagagaaaaaatcgaactttaaactttaatttcttgaatttgaattttagtttaagttgtatgcatgatcaactatgagaagctctaacactt |
33247939 |
T |
|
| Q |
101 |
atgtt---------aaatattgtagttagaagttgtaaacaatctcaccgattctttcatatttgtaagccgtagaaagagcaattcatttcttggtaag |
191 |
Q |
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| T |
33247938 |
atgtttaatacgttaaatattgtagttagaagttgtaaacaatcttaccgattctttcatatttgtaagttgt--aaagagcaattcatttcttggtaag |
33247841 |
T |
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| Q |
192 |
agctcatatctaatctttcacggtac |
217 |
Q |
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| T |
33247840 |
agctcatatctaatctttcatggtac |
33247815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 29372669 - 29372726
Alignment:
| Q |
144 |
tctttcatatttgtaagccgtagaaa-gagcaattcatttcttggtaagagctcatat |
200 |
Q |
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| T |
29372669 |
tctttcatatttgtaagctgtagaaaagaggaattcatttattggtaagagctcatat |
29372726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 6475243 - 6475197
Alignment:
| Q |
24 |
ctttaaactttaatttcttgaatttgaatttcaatttaagttgtgta |
70 |
Q |
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| T |
6475243 |
ctttaaactttaaattcttgagtttgaatttcagtttaagttttgta |
6475197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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