View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20438_low_6 (Length: 327)
Name: NF20438_low_6
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 48 - 312
Target Start/End: Original strand, 20644518 - 20644780
Alignment:
| Q |
48 |
ttaactactatgtaatggtttttaattcaggttcataaattcctattacatggatttatttcttcaatctaaaaccaaacaatcccataaagatctaaga |
147 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20644518 |
ttaactaccatgtaatggtttttaatttaggttcataaattccta---catggatttattccttcaatctaaaaccaaacaatcccataaagatctaaga |
20644614 |
T |
|
| Q |
148 |
ttaacaaattcaaacccttttcttattaatccataagacaagatagcacgttaaacatcaacaatgtatctatctgagattttattagaaaaagctagca |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20644615 |
ttaacaaattcaaacccttttcttattaatccataagacaagatagcacgttaagcatcaacaatgtatcgatctgagattttattagaaaaagctagca |
20644714 |
T |
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| Q |
248 |
a-gggacataatcacgtttcaattttagaaacggaaaaagacgtcaattattttaatggatattga |
312 |
Q |
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| T |
20644715 |
aggggacagaatcacgtgtcaatttgagaaacggaaaaagacgtcaattattttaatggatattga |
20644780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20644238 - 20644286
Alignment:
| Q |
1 |
atttgaaagaaaacagtctaacgtatcactaaaatagaatttcatgttt |
49 |
Q |
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| T |
20644238 |
atttaaaagaaaacagtctaacgtatcactaaaatagaatttcatgttt |
20644286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 3174652 - 3174695
Alignment:
| Q |
264 |
ttcaattttagaaacggaaaaagacgtcaattattttaatggat |
307 |
Q |
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| T |
3174652 |
ttcaatttgagaaatggaaaaagacgtcaattattttagtggat |
3174695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 45 - 309
Target Start/End: Original strand, 33248525 - 33248790
Alignment:
| Q |
45 |
tgtttaactactatgtaatggtttttaattcaggttcataaattcctattacatggatttatttcttcaatctaaaaccaaacaatcccataaagatcta |
144 |
Q |
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| T |
33248525 |
tgtttaactaccatgtaatggtttttaattcgggatcataaattcctattacatggatttatttcttcaatctaaaaccaaacaatcccataaagatcta |
33248624 |
T |
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| Q |
145 |
agattaacaaattcaaacccttttcttattaatccataagacaagatagcacgttaaacatcaacaatgtatctatctgagattttattagaaaaagcta |
244 |
Q |
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| T |
33248625 |
agattaacaaattcaaatccttttcttattaatccataagacaagatagcacgttaagcattaaaaatgtatctatctgggattttattagaaaaagcta |
33248724 |
T |
|
| Q |
245 |
gcaa-gggacataatcacgtttcaattttagaaacggaaaaagacgtcaattattttaatggatat |
309 |
Q |
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| T |
33248725 |
gcaaggggacagaatcacgtgtcaatttgaaaaacggaaaaggacgtcaattattttaatggatat |
33248790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 33248245 - 33248290
Alignment:
| Q |
4 |
tgaaagaaaacagtctaacgtatcactaaaatagaatttcatgttt |
49 |
Q |
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| T |
33248245 |
tgaaagaaaacagtctaacgtatcactaaaatataatttcatgttt |
33248290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 3944215 - 3944306
Alignment:
| Q |
222 |
tgagattttattagaaaaagctagcaaggg-acataatcacgtttcaattttagaaacggaaaaagacgtcaattattttaatggatattga |
312 |
Q |
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| T |
3944215 |
tgagattttattagaaaaagctagcaaggggacataaacacgtgtcaatttgagaaacggaaaaagacgtcaattattttaatggatattga |
3944306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 4022950 - 4022903
Alignment:
| Q |
265 |
tcaattttagaaacggaaaaagacgtcaattattttaatggatattga |
312 |
Q |
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| T |
4022950 |
tcaatttgagaaacgaaaaaagacgtcaattattttaatggatattga |
4022903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 16068448 - 16068491
Alignment:
| Q |
264 |
ttcaattttagaaacggaaaaagacgtcaattattttaatggat |
307 |
Q |
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| T |
16068448 |
ttcaatttgagaaacggaaaaaaacgtcaattattttaatggat |
16068491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 16066114 - 16066162
Alignment:
| Q |
264 |
ttcaattttagaaacggaaaaagacgtcaattattttaatggatattga |
312 |
Q |
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|||||||| ||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
16066114 |
ttcaatttgagaaacggaaaaagatgtcaattcttttaatggatcttga |
16066162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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