View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20438_low_8 (Length: 269)
Name: NF20438_low_8
Description: NF20438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20438_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 39483172 - 39483421
Alignment:
| Q |
1 |
aatccctccgagtgtttcactgtcggtaaatttgtgtcctgggcctccggaacttggacccgaatccttgatccctccgagtgtttcaattggcacacct |
100 |
Q |
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| T |
39483172 |
aatccctccgagtgtttcactgtcggtaaatttgtgtcctgggcctccggaacttggacccgaatccttgatccctccgagtgtttcaattggcacacct |
39483271 |
T |
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| Q |
101 |
tgcttgattgctccaagagaatgtgataaccaatcaaacaaatccacgacttcctctctagtagctgagtttttggtgtcaatgatactcaatggacgtg |
200 |
Q |
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| T |
39483272 |
tgtttgattgctccaagagaatgtgataaccaatcgaacaaatccaagacttcctctctagtagctgagtttttggtgtcaatgatactcaatggacgtg |
39483371 |
T |
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| Q |
201 |
atgcttctaagatcacaaaagcatagttcatcaacatgaagagaactaat |
250 |
Q |
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| T |
39483372 |
atgcttctaagatcacaaaagcatagttcatcaacatgaagagaactaat |
39483421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 39483119 - 39483190
Alignment:
| Q |
17 |
tcactgtcggtaaatttgtgtcctgggcctccggaacttggacccgaatccttgatccctccgagtgtttca |
88 |
Q |
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| T |
39483119 |
tcactgttggtaaatttgtgtcccacgcctccggaacttggacccgaatccttaatccctccgagtgtttca |
39483190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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