View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20440_high_4 (Length: 204)
Name: NF20440_high_4
Description: NF20440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20440_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 8362296 - 8362447
Alignment:
| Q |
31 |
tagttgatgccatgtttcaaatcacaattgaaattaatttgttgt--ttatatgtttgtgtaaggaacagtaatgagaatcatatttatagataaactaa |
128 |
Q |
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| T |
8362296 |
tagttgatgccatgtttcaaatcacaattgaaattaatttgttgtaattatatgtttgtgtaaggaacagtaatgagaatgatatttatagataaactaa |
8362395 |
T |
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| Q |
129 |
ttggagttgttacatgaatttatggttgttaaacatatttggtgatctatta |
180 |
Q |
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| T |
8362396 |
ttggagttgttacatgaatttatggttgttaaacatatttggtgatctatta |
8362447 |
T |
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