View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20440_low_1 (Length: 530)
Name: NF20440_low_1
Description: NF20440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20440_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 514
Target Start/End: Complemental strand, 52049546 - 52049044
Alignment:
| Q |
13 |
aacaatatcatagggtaaaaattgaaattaaacgtcaagcagagaagacacaaacaggaactagtttccacactattaacgacaacaggcatacaatatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52049546 |
aacaatatcatagggtaaaaattgaaattaaacgtcaagcagagaagacacaaacaggaactagtttccacactattaacgacaacaggcatacaatatg |
52049447 |
T |
|
| Q |
113 |
tcataatcaaacctcaacatgcaatnnnnnnn-tcagaattcattgctaaagagaattttgaacagacatacttggatatcgtttaagctctcgttggac |
211 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52049446 |
tcataatcaaacctcaacatgcaataaaaaaaatcagaatccattgctaaagagaattttgaacagacatacttggatatcgtttgagctctcgttggac |
52049347 |
T |
|
| Q |
212 |
aaggtcataagggaaaggacaaagttgttccaccctacatattgcaacatcctttgcatctacctttgttcgttgatcatcaagttcataataaacctat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52049346 |
aaggtcataagggaaaggacaaagttgttccaccctacatattgcaacatcctttgcatctacctttgttcgttgatcatcaagttcgtaataaacctat |
52049247 |
T |
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| Q |
312 |
aaaacattgacgatcataaaaagcatatttagaaaacagtcaaagcaatgagtaatgttcggaaatatggttaagatgaaacccactagatgaacagcca |
411 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52049246 |
aagacattgacgatcataaaaagcatatttagaaaacagtcaaagcaatgagtaatgttcggaaatatggttaagatgaaacccactagatgaacagcca |
52049147 |
T |
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| Q |
412 |
gtttgaatgagggtcgcaaacctttccagaacatagtattagacgcctaataccctcctcaacatttgagtgattattttggtcttttatgaggcgctta |
511 |
Q |
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| T |
52049146 |
gtttgaatgagggtcgcaaacctttccagaacatagtattagacgcctaataccctcctcaacatttgagtgcttattttggtcttttatgaggcgctta |
52049047 |
T |
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| Q |
512 |
aat |
514 |
Q |
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||| |
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| T |
52049046 |
aat |
52049044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 178 - 309
Target Start/End: Original strand, 7769118 - 7769249
Alignment:
| Q |
178 |
acatacttggatatcgtttaagctctcgttggacaaggtcataagggaaaggacaaagttgttccaccctacatattgcaacatcctttgcatctacctt |
277 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |
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| T |
7769118 |
acatacttggatatcgtttaagttctcgttggacaaggtcatatgggaaaggacaaagctgttccaccctacatattgcaacatctgatgcatcaacctt |
7769217 |
T |
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| Q |
278 |
tgttcgttgatcatcaagttcataataaacct |
309 |
Q |
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| T |
7769218 |
agatcgatgatcatcaagttcatagtaaacct |
7769249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 514
Target Start/End: Original strand, 7769358 - 7769441
Alignment:
| Q |
431 |
acctttccagaacatagtattagacgcctaataccctcctcaacatttgagtgattattttggtcttttatgaggcgcttaaat |
514 |
Q |
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||||||||||| || |||| || ||| |||||||||||||||||| | ||| | |||| ||||||||||||||||||||||| |
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| T |
7769358 |
acctttccagagcagagtactaaacgtctaataccctcctcaacagtgttgtggtcatttcggtcttttatgaggcgcttaaat |
7769441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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