View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20440_low_2 (Length: 479)
Name: NF20440_low_2
Description: NF20440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20440_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39847461 - 39847679
Alignment:
| Q |
1 |
cagaataatgttgtctcagctgagcatcacgtattgtattgatagtaacagaatttttccattaaaatctcaacccacttggtgtgcttgattctccgtt |
100 |
Q |
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| T |
39847461 |
cagaataatgttgtctcagctgagcatcacgtattttattgatagtaacagaatttttccattaaaatctcaacccacttggtgtgtttgattctccgtt |
39847560 |
T |
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| Q |
101 |
tgcatcagtgctaatggttgcaaggtgaagcatgtctttcagagtgtcttggaaaattcacctcagtttggagttgcataaatgtgaacttgaccacaaa |
200 |
Q |
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| T |
39847561 |
tgcatcagtgctaatggttgcaaggtgaagcatgtctttcagagtgtcttggaaaattcacctcagtttggagttgaataaatgtgaacttgaccacaaa |
39847660 |
T |
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| Q |
201 |
atcagaagaatatttgaat |
219 |
Q |
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| T |
39847661 |
atcagaagaatatttgaat |
39847679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 319 - 467
Target Start/End: Original strand, 39849417 - 39849565
Alignment:
| Q |
319 |
atctatggcaagaattaagattcgtacatcttaaatgtgaagaagtgatgaatctcgagttcggacctaaatcctttcatatcaacattttttgcattta |
418 |
Q |
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| T |
39849417 |
atctatgtcaagaattaagatttgcacaccttaaatgtgaagaagtgatgaatctcgagttcgaacgtaaatcctttcatatcaacattttttgcatcta |
39849516 |
T |
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| Q |
419 |
tcaattgaattgtacttgtgagactaacttaaattcttttaataatgat |
467 |
Q |
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| T |
39849517 |
tcaactgaattgtacttgtgagactaaattaaattcttttaataatgat |
39849565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 39848981 - 39849036
Alignment:
| Q |
236 |
ctttattgaacatattagatgttgatactttccggatatgttatgcaaagtttaat |
291 |
Q |
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| T |
39848981 |
ctttattgaacatattagacgttgatactttccggaaatgttatgcaaagtttaat |
39849036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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