View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20440_low_3 (Length: 421)
Name: NF20440_low_3
Description: NF20440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20440_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 36471882 - 36471480
Alignment:
| Q |
1 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagcatcaattatcattttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36471882 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagcatcaattatcattttc |
36471783 |
T |
|
| Q |
101 |
atcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaagttatgcgttttgcattcatatatagattaagatgagatgacttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36471782 |
atcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaagttgtgtgttttgcatttatatatagattaagatgagatgacttaa |
36471683 |
T |
|
| Q |
201 |
cttcnnnnnnncccttcaaattacaggtggaacaggcatagcaaatctaattaaaaggcttgaaaacaaagagtacatgggatttggtaacttatgttcg |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36471682 |
cttctttttttcccttcaaattacaggtggaacaggcatagcaaatctaattaaaaggcttgaaaacaaagagtacatgggatttggtaacttatgttcg |
36471583 |
T |
|
| Q |
301 |
tacgcggttaggaattaaagttcaatatgtgtaaaacttgaggacaaagatttttacttcacaatagttttgtgttgtcaagttggtatcaaaagtacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36471582 |
tacgcggttaggaattaaagttcaatatgtgtaaaacttgaggacaaagatttttacttcacaatagttttgtgttgtcaagttggtatcaaaagtacaa |
36471483 |
T |
|
| Q |
401 |
cat |
403 |
Q |
| |
|
||| |
|
|
| T |
36471482 |
cat |
36471480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 36462655 - 36462502
Alignment:
| Q |
1 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagcatcaattatcattttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
36462655 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgtcttattagggagagcatcaattatcattttc |
36462556 |
T |
|
| Q |
101 |
atcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaa |
154 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
36462555 |
atcttagccctcacagtttttgtgagtggaatatcactaggtaagtgtcgttaa |
36462502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 36461974 - 36461859
Alignment:
| Q |
213 |
ccttcaaattacaggtggaacaggcatagcaaatctaattaaaaggcttgaaaacaaagagtacatgggatttggtaacttatgttcgtacgcggttagg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| | | ||||| ||||| || ||| |
|
|
| T |
36461974 |
ccttcaaattacaggtggaacaggcatagcaagtctgattaaaaggactgaaaacaaggagtacatgggatttggaagcctatgtgcgtaccgtgtcagg |
36461875 |
T |
|
| Q |
313 |
aattaaagttcaatat |
328 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
36461874 |
aattaaagttaaatat |
36461859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 34070747 - 34070801
Alignment:
| Q |
54 |
tgagaaagcttattgccttattaggaagagcatcaattatcattttcatcctagc |
108 |
Q |
| |
|
||||||| ||||||||||||| ||| | ||| || |||||||||||||||||||| |
|
|
| T |
34070747 |
tgagaaaacttattgccttatcaggtaaagcttcgattatcattttcatcctagc |
34070801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University