View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20441_high_1 (Length: 1280)
Name: NF20441_high_1
Description: NF20441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20441_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 104; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 1157 - 1268
Target Start/End: Complemental strand, 2558671 - 2558560
Alignment:
| Q |
1157 |
ctcatccatgtcaatttctgcatcactttcttcatcaaaagagtaattatgctcttccatttcctcacattcttcaatttcttcattgctgtgaacaatg |
1256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2558671 |
ctcatccatgtcaatttctgcatcactttcttcatcaaaagagtaattatgctcatccatttcctcactttcttcaatttcttcattgctgtgaacaatg |
2558572 |
T |
|
| Q |
1257 |
tattcttcatct |
1268 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2558571 |
tattcttcatct |
2558560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 1157 - 1268
Target Start/End: Complemental strand, 19330467 - 19330361
Alignment:
| Q |
1157 |
ctcatccatgtcaatttctgcatcactttcttcatcaaaagagtaattatgctcttccatttcctcacattcttcaatttcttcattgctgtgaacaatg |
1256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19330467 |
ctcatccatgtcaatttctgcatcactttctt-----aaagagtaattatgctcatccatttcctcactttcttcaatttcttcattgctgtgaacaatg |
19330373 |
T |
|
| Q |
1257 |
tattcttcatct |
1268 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19330372 |
tattcttcatct |
19330361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 309 - 422
Target Start/End: Complemental strand, 16441684 - 16441571
Alignment:
| Q |
309 |
tctaggaaaaagctccaagagtctttagactccacctcaaccactgcaaatgctattgggaatagcccattatttgcatcaagtgaaacaacagacaata |
408 |
Q |
| |
|
|||||||||||||||||||||||| | |||| | |||||||||| ||||||||| ||| || || |||||||||||||| ||||||||| |||||| || |
|
|
| T |
16441684 |
tctaggaaaaagctccaagagtctctgcactctatctcaaccactacaaatgctaatggaaaaagtccattatttgcatctagtgaaacagcagacagta |
16441585 |
T |
|
| Q |
409 |
acacacctccataa |
422 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
16441584 |
gcacccctccataa |
16441571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 855 - 894
Target Start/End: Complemental strand, 16441452 - 16441413
Alignment:
| Q |
855 |
ttgatcataaatgctacaccatctgggacaggagaagcat |
894 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
16441452 |
ttgatcataaatgctacaccatctggggcgggagaagcat |
16441413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 786 - 820
Target Start/End: Complemental strand, 16441495 - 16441461
Alignment:
| Q |
786 |
gctatccatgttgaggttgcattagtcttctcaga |
820 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
16441495 |
gctatccatgttgaggttacattagtcttctcaga |
16441461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 43040039 - 43040092
Alignment:
| Q |
519 |
aaaacacgatgttcttctaaggatgttccatcatgaaagttcaatttaactatg |
572 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
43040039 |
aaaacacaatcttcttctaaggatgttccattatgaaagttcaattttactatg |
43040092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University