View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20441_high_5 (Length: 391)

Name: NF20441_high_5
Description: NF20441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20441_high_5
NF20441_high_5
[»] chr1 (2 HSPs)
chr1 (1-379)||(33988828-33989206)
chr1 (305-357)||(31517667-31517719)
[»] chr3 (3 HSPs)
chr3 (306-354)||(24158444-24158492)
chr3 (306-354)||(22667497-22667545)
chr3 (306-354)||(22724136-22724184)
[»] chr8 (2 HSPs)
chr8 (309-374)||(44236754-44236819)
chr8 (306-374)||(11376777-11376845)
[»] chr7 (1 HSPs)
chr7 (309-374)||(3836614-3836679)
[»] chr5 (2 HSPs)
chr5 (313-354)||(37968971-37969012)
chr5 (306-370)||(5377125-5377189)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 33989206 - 33988828
Alignment:
Q  1 ctaatattgctgttcttatctctcatctttcatgtctatattatctcatcttttttcagaataaattggtgaaaaacgatgcttaaatgtaaaatatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33989206 ctaatattgctgttcttatctctcatctttcatgtctatattatctcatcttttttcagaataaattggtgaaaaacgatgcttaaatgtaaaatatgta 33989107  T
Q  101 aatggaatttaatttactttcttgtactgcaaaagaaaaatgcaaataagcaacagtccctagttcaataatgttgtgaatattttattttgctgcatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  33989106 aatggaatttaatttactttcttgtactgcaaaagaaaaatgcaaataagcaagagtccctagttcaataatgttgtgaacattttattttgctgcatgg 33989007  T
Q  201 tatcgacttaatttgtgtataggatctaaatgctatagtgtaaatatttgtaacactatctagtgtctgtcaaccaatcacaaattatgttaaggacctg 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33989006 tatcgacttaatttgtatataggatctaaatgctatagtgtaaatatttgtaacactatctagtgtctgtcaaccaatcacaaattatgttaaggacctg 33988907  T
Q  301 tttaatggcttatttgagcttatgtactgacataactacttgtaaaactgtttgggataatctatgaaaatagcctctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988906 tttaatggcttatttgagcttatgtactgacataactacttgtaaaactgtttgggataatctatgaaaatagcctctc 33988828  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 31517667 - 31517719
Alignment:
Q  305 atggcttatttgagcttatgtactgacataactacttgtaaaactgtttggga 357  Q
    ||||||||||||||||||| ||||| |||||  |||||| | |||||||||||    
T  31517667 atggcttatttgagcttatttactggcataagcacttgtgagactgtttggga 31517719  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 24158444 - 24158492
Alignment:
Q  306 tggcttatttgagcttatgtactgacataactacttgtaaaactgtttg 354  Q
    |||||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  24158444 tggcttatttaagcttatctactgacataagtacttgtgaaactgtttg 24158492  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 22667545 - 22667497
Alignment:
Q  306 tggcttatttgagcttatgtactgacataactacttgtaaaactgtttg 354  Q
    |||||||||||||||||| |||||||||||  |||||| | ||||||||    
T  22667545 tggcttatttgagcttatctactgacataagcacttgtgagactgtttg 22667497  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 22724184 - 22724136
Alignment:
Q  306 tggcttatttgagcttatgtactgacataactacttgtaaaactgtttg 354  Q
    |||||||||||||||||| |||||||||||  |||||| | ||||||||    
T  22724184 tggcttatttgagcttatctactgacataagcacttgtgagactgtttg 22724136  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 44236754 - 44236819
Alignment:
Q  309 cttatttgagcttatgtactgacataactacttgtaaaactgtttgggataatctatgaaaatagc 374  Q
    |||||||||| |||| ||||| |||||  |||||| | |||||| |||| ||||||||||||||||    
T  44236754 cttatttgagtttatctactggcataagcacttgtgagactgttcgggagaatctatgaaaatagc 44236819  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 11376845 - 11376777
Alignment:
Q  306 tggcttatttgagcttatgtactgacataactacttgtaaaactgtttgggataatctatgaaaatagc 374  Q
    |||||||||||||||||| |||||| |||| | ||||| | ||| ||||||| ||  ||||||||||||    
T  11376845 tggcttatttgagcttatctactgatataagttcttgtgagactatttgggagaacttatgaaaatagc 11376777  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 3836614 - 3836679
Alignment:
Q  309 cttatttgagcttatgtactgacataactacttgtaaaactgtttgggataatctatgaaaatagc 374  Q
    ||||||||||||||| ||||| | |||  |||||| ||||||||||||| ||  ||||||||||||    
T  3836614 cttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaatagc 3836679  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 37969012 - 37968971
Alignment:
Q  313 tttgagcttatgtactgacataactacttgtaaaactgtttg 354  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||    
T  37969012 tttgagcttatctactgacataagtacttgtgaaactgtttg 37968971  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 5377125 - 5377189
Alignment:
Q  306 tggcttatttgagcttatgtactgacataactacttgtaaaactgtttgggataatctatgaaaa 370  Q
    |||||||||||||||||| || ||||||||  |||||||| |||||| | |||||  ||||||||    
T  5377125 tggcttatttgagcttatctattgacataagcacttgtaagactgttagcgataacttatgaaaa 5377189  T

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