View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20441_high_6 (Length: 352)
Name: NF20441_high_6
Description: NF20441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20441_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 12216910 - 12216578
Alignment:
| Q |
5 |
ggtagattattctgattctcttatttttcacagtgatctagctagctgatgagttgttaccttgtgtgcctatatttcctcactgatcttgctgccacac |
104 |
Q |
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| T |
12216910 |
ggtagaatattctgattctcttatttttcacagtgatctagctagctgatgagttgttaccttgtgtgcctatatttcctcactgatcttactgccacac |
12216811 |
T |
|
| Q |
105 |
gtgctttgccttgctcatattattgtagctgtcaaagttattttcgtcccacacatcatagattcatagcaaccagtttttgtcctatgcttccaatttt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12216810 |
gtgctttgccttgctcatattattgtagctgtcaaagttattttcgtcccacacatcatagattcatagcaaccagtttttgtcctatgcttccaatttt |
12216711 |
T |
|
| Q |
205 |
ggactaaattttcatatatagtaccccctatatgtcagccatcacaattttgttggttattgtttaattacatatgnnnnnnnnngaaggatttaattac |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
12216710 |
ggactaaattttcatatatagtaccccctatatgtcagccatcacaattttattggttattgtttaattacatatgtgtttttttgaaggatttaattac |
12216611 |
T |
|
| Q |
305 |
atatgttagagacatggtttgtttgtaactttt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
12216610 |
atatgttagagacatggtttgtttgtaactttt |
12216578 |
T |
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