View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20441_high_9 (Length: 208)
Name: NF20441_high_9
Description: NF20441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20441_high_9 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 23068535 - 23068352
Alignment:
| Q |
25 |
gcggattaattttagcaattggcgctgaacagatttccaattccctctcttttttcacacacgaccttcatctctatcaacccacatctcaccttcttct |
124 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
23068535 |
gcggattaattttagcaattggcgctcaacaaatttccaattccctctcttctttcacacacgaccttcatttgtatcaacccacatctcaccttcttct |
23068436 |
T |
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| Q |
125 |
ctcatctcaataccatcaaattgcataaccaccacctctattgaatcccataactgccaccaccatcaaaccccacttctaacc |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23068435 |
ctcatctcaataccatcgaattgcataaccaccacctccattgaatcccataactgccaccaccatcaaaccccacttctaacc |
23068352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 135543 - 135727
Alignment:
| Q |
25 |
gcggattaa-ttttagcaattggcgctgaacagatttccaattccctctcttttttcacacacgaccttcatctctatcaacccacatctcaccttcttc |
123 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
135543 |
gcggattaacttttagcaattggcgctgaacagatttccaattccctctcttctttcacacacgaccttcatctgtatcaacccacatctcaccttcttc |
135642 |
T |
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| Q |
124 |
tctcatctcaataccatcaaattgcataaccaccacctctattgaatcccataactgccaccaccatcaaaccccacttctaacc |
208 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
135643 |
tctcatctcaataccatcgaattgcataaccaccacctcaattgaatcccataactgacaccaacatcaaaccccacttctaacc |
135727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 25808879 - 25809063
Alignment:
| Q |
25 |
gcggattaa-ttttagcaattggcgctgaacagatttccaattccctctcttttttcacacacgaccttcatctctatcaacccacatctcaccttcttc |
123 |
Q |
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||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25808879 |
gcggattaacttttagcaattggcgttgaacagattttcaattccctctcttctttcacacacgaccttcatctgtatcaacccacatctcaccttcttc |
25808978 |
T |
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| Q |
124 |
tctcatctcaataccatcaaattgcataaccaccacctctattgaatcccataactgccaccaccatcaaaccccacttctaacc |
208 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25808979 |
tctcatctcaataccatcgaattgcataaccaccacctccattgaatcccataactgtcaccatcatcaaaccccacttctaacc |
25809063 |
T |
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