View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20441_low_2 (Length: 586)
Name: NF20441_low_2
Description: NF20441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20441_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 17878860 - 17878398
Alignment:
| Q |
17 |
cataggctcataaaaggatctcttcagtttgtttcaggtatatcaatttcagattttacttgttagttgttcgttaagttccttttgactttgtatatta |
116 |
Q |
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| T |
17878860 |
cataggctcataaaaggatctcttcagtttgtttcaggtatatcaattttagattttacttgttagttgttcattaagttccttttgactttgtatatta |
17878761 |
T |
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| Q |
117 |
gagtttttcaatcttatatgtgctaaataaaacgagcctattaacctgtttaaattttgggttgtgtcatggtccatgagtttctctctttttgtttaat |
216 |
Q |
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| T |
17878760 |
gagtttttcaatcttatatgtgctaaataaaacgagcctattaacctgtttaaattttgggttgtgtcatggtccatgagtttctctctttttgtttaat |
17878661 |
T |
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| Q |
217 |
ggttttatcttcgcatcatattacagttgcagtggccgtagcgtttggtgtggctgctgccaggaagaatgctactggacggaggaatgctgctgcgcga |
316 |
Q |
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| T |
17878660 |
ggttttatcttcgcatcatactacagttgcagtggccgtagcgtttggtgtggctgctgccaggaagaatgctactggacggaggaatgctgctgcgcga |
17878561 |
T |
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| Q |
317 |
aagaatgcgtctggttaaaagagtgggtcgtaatccttaccttcatctggataatattctctttcgaaatagaaaatgttactaatatttattttgttag |
416 |
Q |
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| T |
17878560 |
aagaatgctgctgcgcgaaagaatgggtcgtaatccttaccttcatctggataatattctctttcgaaatagaaaatgttactaatatttattttgttag |
17878461 |
T |
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| Q |
417 |
aaaaactgaacttacgacatcttttatcacttcaatctctatatttattttctatactatcaa |
479 |
Q |
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| T |
17878460 |
aaaaactgaacttacgacatcttttatcacttcaatctctatatttattttctaaactatcaa |
17878398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 15046199 - 15046092
Alignment:
| Q |
71 |
tttacttgttagttgttcgttaagttccttttgactttgtatattagagtttttcaatcttatatgtgc----taaataaaacgagcctattaacctgtt |
166 |
Q |
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||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||| | || | ||||||||| ||||||||||||| ||| |
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| T |
15046199 |
tttacttgttagttgctcattaaattccttttgactttgtatatta----ttttcaatcttgtgtgatctaagtaaataaaatgagcctattaaccagtt |
15046104 |
T |
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| Q |
167 |
taaattttgggt |
178 |
Q |
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| T |
15046103 |
taaattttgggt |
15046092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 14772090 - 14772009
Alignment:
| Q |
49 |
ttcaggtatatcaatttcagattttacttgttagttgttcgttaagttccttttgactttgtatattagagtttttcaatct |
130 |
Q |
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| T |
14772090 |
ttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaagttgttaaatct |
14772009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 306
Target Start/End: Complemental strand, 15045878 - 15045779
Alignment:
| Q |
207 |
tttgtttaatggttttatcttcgcatcatattacagttgcagtggccgtagcgtttggtgtggctgctgccaggaagaatgctactggacggaggaatgc |
306 |
Q |
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||||||||||| ||||||| |||||||||||||||| || |||||| || || |||| |||| || ||| |||||||||| | ||| ||||| |||||| |
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| T |
15045878 |
tttgtttaatgattttatcatcgcatcatattacagctgtagtggctgtggcatttgtggtggttgttgcaaggaagaatgttgctgcacggaagaatgc |
15045779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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