View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20441_low_3 (Length: 432)
Name: NF20441_low_3
Description: NF20441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20441_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 68 - 419
Target Start/End: Original strand, 39847125 - 39847469
Alignment:
| Q |
68 |
ccaaaataccagcttactatggctgatgtaaatcaaagttctatcgaacttggataatagagnnnnnnnncttctctattcttgttaatgcagctttaaa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39847125 |
ccaaaataccagcttactatggctgatgtaaatcaaagttctatcgaacttggacaatagagaaaaaaaacttctctattcttgttaatgcagctttaaa |
39847224 |
T |
|
| Q |
168 |
ctttctgagaaatattttgtcattttcgcatcggttatgacttatgagtgaatgaaaggttagtaattcgcagttcggctaaagggtaagtaaaatttca |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39847225 |
ctttctgagaaatattttgtcattttcgcatcggttat-------gagtgaatgaaaggttagtaattcgcagttcggctaaagggtaagtaaaatttcg |
39847317 |
T |
|
| Q |
268 |
ttaaagattattccgactaaaataatgcttgcaagaaaacatgcttcaagttcactctttatcttatgctgtgacataattccccaaaactctaatggga |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39847318 |
ttaaagattattccgactaaaataatgcttgcaagaaaacatgcttcaagttcactctttatcttatgctgtgacataattccccaaaactctaatggga |
39847417 |
T |
|
| Q |
368 |
tgctaaatattcaattaaattgattagaagcatatttttacaacagaataat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39847418 |
tgctaaatattcaattaaattgattagaagcatatttttacaacagaataat |
39847469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University