View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20441_low_4 (Length: 411)

Name: NF20441_low_4
Description: NF20441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20441_low_4
NF20441_low_4
[»] chr2 (2 HSPs)
chr2 (166-394)||(25809214-25809442)
chr2 (1-118)||(25809050-25809166)
[»] scaffold0011 (2 HSPs)
scaffold0011 (166-394)||(135878-136107)
scaffold0011 (1-118)||(135714-135830)
[»] chr7 (3 HSPs)
chr7 (166-331)||(23068030-23068201)
chr7 (1-118)||(23068249-23068365)
chr7 (351-394)||(23067984-23068027)
[»] chr6 (2 HSPs)
chr6 (166-326)||(26908897-26909052)
chr6 (42-118)||(26909101-26909178)
[»] chr5 (2 HSPs)
chr5 (41-118)||(20746369-20746447)
chr5 (166-222)||(20746496-20746552)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 166 - 394
Target Start/End: Original strand, 25809214 - 25809442
Alignment:
Q  166 atcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaccttttctatagttgttgtgttgttctacatcttgaatg 265  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||  |||| | ||||||||||||||||||||||||||||||    
T  25809214 atcccaaaatctgagctgtttgtcaatttcttgtgatactattttgttccctatttagttaatttttttgtagttgttgtgttgttctacatcttgaatg 25809313  T
Q  266 ttaattataaatggaagtttattcatacacataaataatgtggtatttaaaagactatttttcttttcaaagcgtttttctttggggtgaaccacaaact 365  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  25809314 tcaattataaatggaaatttattcatacacataaataatgtggtatttaaaagactatttttcttttcaaagcttttttctttggggtgaaccgcaaact 25809413  T
Q  366 ggtttttgttgaagcattgaatgatgttt 394  Q
    |||||||||||||||||||||||||||||    
T  25809414 ggtttttgttgaagcattgaatgatgttt 25809442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 25809050 - 25809166
Alignment:
Q  1 ccccacttctaacccccatctctctcatacccagacccccatctcattgaacttcacttctcacaacccattgaacccatctctcatctcattacaagca 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25809050 ccccacttctaacccc-atctctctcatacccagacccccatctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagca 25809148  T
Q  101 tgcacccacacaggtata 118  Q
    ||||||||||||||||||    
T  25809149 tgcacccacacaggtata 25809166  T

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Target: scaffold0011 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 166 - 394
Target Start/End: Original strand, 135878 - 136107
Alignment:
Q  166 atcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagtta--ccttttctatagttgttgtgttgttctacatcttgaa 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    |||| | ||||||||||||||||||||||||||||    
T  135878 atcccaaaatctgagctgtttttcaattttttgtgatactattttgttctctatttagttaatttttttttgtagttgttgtgttgttctacatcttgaa 135977  T
Q  264 tgttaattataaatggaagtttattcatacacataaataatgtggtatttaaaagactatttttcttttcaaagcgtttttctttggggtgaaccacaaa 363  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  135978 tgtcaattataaatggaagtttattcatacacataaataatgtggtatttaaaagactatttttcttttcaaagcatttttctttggggtgaaccacaaa 136077  T
Q  364 ctggtttttgttgaagcattgaatgatgttt 394  Q
    || ||||||||||||||||||||||||||||    
T  136078 ct-gtttttgttgaagcattgaatgatgttt 136107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 135714 - 135830
Alignment:
Q  1 ccccacttctaacccccatctctctcatacccagacccccatctcattgaacttcacttctcacaacccattgaacccatctctcatctcattacaagca 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  135714 ccccacttctaacccc-atctctctcatacccagacccccatctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagca 135812  T
Q  101 tgcacccacacaggtata 118  Q
    ||||||||||||||||||    
T  135813 tgcacccacacaggtata 135830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 166 - 331
Target Start/End: Complemental strand, 23068201 - 23068030
Alignment:
Q  166 atcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaccttttctatagttgt------tgtgttgttctacatct 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |  ||||      |||||||||||||||||    
T  23068201 atcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaatttttttttttttgtaattattgtgttgttctacatct 23068102  T
Q  260 tgaatgttaattataaatggaagtttattcatacacataaataatgtggtatttaaaagactatttttcttt 331  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  23068101 tgaatgtcaattataaatggaagtttattcatagacataaataatttggtatttaaaagactatttttcttt 23068030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 23068365 - 23068249
Alignment:
Q  1 ccccacttctaacccccatctctctcatacccagacccccatctcattgaacttcacttctcacaacccattgaacccatctctcatctcattacaagca 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23068365 ccccacttctaacccc-atctctctcatacccagacccccatctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagca 23068267  T
Q  101 tgcacccacacaggtata 118  Q
    ||||||||||||||||||    
T  23068266 tgcacccacacaggtata 23068249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 23068027 - 23067984
Alignment:
Q  351 ggtgaaccacaaactggtttttgttgaagcattgaatgatgttt 394  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  23068027 ggtgaaccgcaaactggtttttgttgaagcattgaatgatgttt 23067984  T

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Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 166 - 326
Target Start/End: Complemental strand, 26909052 - 26908897
Alignment:
Q  166 atcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaccttttctatagttgttgtgttgttctacatcttgaatg 265  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||   ||||| |   |||||||||||||||||||||||||     
T  26909052 atcccaaaatctgagctgtttttcaatttcttgtgatacggttttgttctccatttagttaa--tttcttt---tgttgtgttgttctacatcttgaatc 26908958  T
Q  266 ttaattataaatggaagtttattcatacacataaataatgtggtatttaaaagactatttt 326  Q
    | |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  26908957 taaattatcaatggaagtttattcatagacataaatattgtggtatttaaaagactatttt 26908897  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 26909178 - 26909101
Alignment:
Q  42 tctcattgaacttcacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtata 118  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| ||  || |||||||||||||||||||||    
T  26909178 tctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtata 26909101  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 20746369 - 20746447
Alignment:
Q  41 atctcattgaacttcacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtata 118  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||  || |||||||||||||||||||||    
T  20746369 atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtata 20746447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 20746496 - 20746552
Alignment:
Q  166 atcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctattta 222  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  20746496 atcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 20746552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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