View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20442_high_2 (Length: 461)
Name: NF20442_high_2
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 12268204 - 12267782
Alignment:
| Q |
18 |
aatgaggtttacactaggtgccccatgtttgtgcttagtcaaaacatcaaatccttgaaagtcaaacataaggattggaataagaatgtgttcggggaca |
117 |
Q |
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| T |
12268204 |
aatgaggtttacactaggtgccccatgtttgtgcttagtcaaaacatcaaatccttgaaagtcaaacataaggattggaataagaatgtgttcggggaca |
12268105 |
T |
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| Q |
118 |
ttaacatcaatttccaagtaactaaatctaaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagagaaagt |
217 |
Q |
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| T |
12268104 |
ttaacatcaatttccaagtaactgaatacaaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagagaaagt |
12268005 |
T |
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| Q |
218 |
tgtggatagaatcaaatccaaattgacaactttgaaggcctctttaatttctatagtgggaagggttcaagttattagattttaattcatagcatgagta |
317 |
Q |
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| T |
12268004 |
tgtggatagaatcaaatccaaattgacaactttgaaggcatctttaatttctatagtgggaagggttcaagttattagattttaattcatagtatgagta |
12267905 |
T |
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| Q |
318 |
tctatagctttgtcatttattcattgtgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttattc |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12267904 |
tctatagctttgtcatttattcattgcgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttatac |
12267805 |
T |
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| Q |
418 |
aatggaggattttgaaacatgta |
440 |
Q |
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| T |
12267804 |
aatggaggattttgaaacatgta |
12267782 |
T |
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