View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20442_high_5 (Length: 357)
Name: NF20442_high_5
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 195 - 350
Target Start/End: Complemental strand, 31876309 - 31876154
Alignment:
| Q |
195 |
aatagccattaagtttgtctcgtgcttgatttcataattcatttagaaatttcttttagtaactaaccatacaaaactactcaaatatggtgaaacagaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31876309 |
aatagccattaagtttgtctcgtgcttgatttcataattcatttagaaatttcttttagtaactaaccatacaaaactactcaaatatggtgaaacagaa |
31876210 |
T |
|
| Q |
295 |
gtggtgttgaatgttagtatatatggaaatgatttctgagtctgcattaccctttg |
350 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31876209 |
gtggtgttgaatgttagtatttatggaaatgatttctgagtctgcattaccctttg |
31876154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 31876451 - 31876304
Alignment:
| Q |
16 |
aaattcttaaaagcaaattgttgaactacatgagttcttgtataacttgtacagttactaataaggtcacatctaacagaatttatcttgcagtcattca |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31876451 |
aaattcttaacagcaaattgttgaactacatgagttcttgtataacttgtacagttactaataaggtcacatctaacagaatttatcttgcagtcattca |
31876352 |
T |
|
| Q |
116 |
ctgtacttacattttttgtgtatatggtgcttttctgtgtaaaatagc |
163 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31876351 |
ctatacttacattttttgtgtatatggtggttttctgtgtaaaatagc |
31876304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 31557574 - 31557675
Alignment:
| Q |
16 |
aaattcttaaaagcaaattgttgaactacatgagttcttgtataacttgtacagttactaataaggtcacatctaacagaatttatcttgcagtcattca |
115 |
Q |
| |
|
|||||||| | | ||||||||||||| | ||| |||| |||||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
31557574 |
aaattctttacaacaaattgttgaaccaagtgatttctggtataacttgtacaattactaataaggtcacatctaacatgatttattttgcactcattca |
31557673 |
T |
|
| Q |
116 |
ct |
117 |
Q |
| |
|
|| |
|
|
| T |
31557674 |
ct |
31557675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 31562183 - 31562228
Alignment:
| Q |
265 |
acaaaactactcaaatatggtgaaacagaagtggtgttgaatgtta |
310 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31562183 |
acaaaactactcaaatatggtcaaacagaagtggtgttgaatgtta |
31562228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 31551116 - 31551185
Alignment:
| Q |
266 |
caaaactactcaaatatggtgaaacagaagtggtgttgaatgttagtatatatggaaatgatttctgagt |
335 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||||||||||| | | | || |||||||| |||||| |
|
|
| T |
31551116 |
caaaactactcaaataaggtgaaacctaattggtgttgaatgttaatctttgtgcaaatgattgctgagt |
31551185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 18234386 - 18234485
Alignment:
| Q |
249 |
tttagtaactaaccatacaaaactactcaaatatggtgaaacagaagtggtgttgaatgttagtatatatggaaatgatttctgagtctgcattaccctt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||| ||| | |||||||||||| |
|
|
| T |
18234386 |
tttagtaactaaccatacaaaactactcaaatatggtgaaacagaagtggtgttgaatgttagtctttgtgcaaatggtttatgaatttgcattaccctt |
18234485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 18230640 - 18230703
Alignment:
| Q |
217 |
tgcttgatttcataattcatttagaaatttcttttagtaactaaccatacaaaactactcaaat |
280 |
Q |
| |
|
|||||||||| || |||||||||| | ||||||||||||| | | ||| ||||||||||||||| |
|
|
| T |
18230640 |
tgcttgattttatcattcatttagtagtttcttttagtaatttagcatgcaaaactactcaaat |
18230703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University