View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20442_high_6 (Length: 326)
Name: NF20442_high_6
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 39059590 - 39059324
Alignment:
| Q |
15 |
cacagacatctgcacatgttcttcaatagagacagagtgaggaaccacgtctccactatcatcatccattgggataatgtaaaagaatacacacaactat |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39059590 |
cacagacatctgcacatgtccttcaatagagacagagtgaggaaccacgtctccactatcatcatccattgggataatgtaaaagaatacacacaaatat |
39059491 |
T |
|
| Q |
115 |
acaccnnnnnnnaactatatataaatgaatatacaccgtgtcacatgattcacaaaacttgcaagattcatctaaaccgtgttgaggctaatcagttagt |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39059490 |
acacctttttttaactatatataaatgaatatacactgtgtcacatgattcacaaaacttgcaagattcatctaaaccgtgttgaggctaatcggttagt |
39059391 |
T |
|
| Q |
215 |
tctacacacaatactttcttccacctttcctcaagcttacaaacgtgtaatcgttgatgttgccaag |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39059390 |
tctacacacaatactttcttccacctttcctcaagcttacaaacgtgtaatcgttgatgttgccaag |
39059324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University